Msac004364.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- PAXBP1
- Assembly
- GCA_002803265.2
- Location
- NW:444950-451199[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.24 1.4e+03 -2.0 0.0 54 88 337 367 330 390 0.75 2 2 2.1e-27 1.2e-23 83.5 7.1 4 272 534 743 531 745 0.91
Sequence Information
- Coding Sequence
- ATGGCAATGCAATTTAGGAAGCCTAAACGGAACCTTCGTGTTAGGGACATAGACGGTTTTCacgaaaatgaaaatgaagaaaaagTGGATGTGGATACAGTACTGAAACTACCAAAACCACAAAAAGAAAAGACAACAAAGAAAGTTAACACTTTAAGTTTTGGTGATGAGTTGAATGAATGTGACGATGGCGAAgaattcaaagttaaaaaatcatcatatagtaaaaaaattaaaaaacaaatgaataaagaaaaaatgggTCGAGATAAAGTAGAAAATggcaaaaaatcaaaaaatattgctgATACAATGAAACCTATTGTTGTTAAACAAACAAACTTTAATtcTGAACCTgttgaaaaagaaataatgcTTACAGGCCGAGCTGCTGAAATGGCCGGCTATGTATCATCAGATGAAGAACCTGATTCATATAGCTCATCATCTCATCGATTTTCTAATCCTGatcaagttaaaatattattaaaaaAGGGACAAATTCCTGATGCAGCGTTAATTCATGCTGCTCGAAAACGAAGACAACAAGCTCGTGATTTGGGAGAAGATTTTATACCAATATCATCACAATCTCAtggTGAATCAAAAGTAGATAATGAACAAACGACTAATCGACGTTTAACACGAGAAGAAGATGAATTAGAAGATAGTGATGATGatggtattattgttatgtctGGAATTGTTAGTCAAGCTGAGGATcggaaaaaaaacttacatatTACGATGgctgatcacACTAACAATACTGAGTTTGAAGATCCTGATGAACTTGATGAAGATAATGATTGGGAAACTCAACAAATAAGAAAAGCAGTAACAGGCTCACAGTTAGCTGCTGCACAACAGGAATCTGCCGGCATGGCtgctttttacaataatatggttataCAGGAACAAGCTATGATGCCAATATTAATGAATCAAAAACCTCGATTCTCTGATTCATATGCGCCACAAGGATTGATGTCTACAATGAATCCAGatgatatcataaataaaaccaaagaaatattaaatgaGTTGAAAGAAAATCGGAATCcggatcaaaaatattttgaagatatGATAAACGAAATACCAGAGATTAAGAATAGAgttgaaatgttaaaaattaatgttccaGAGTTGGATGATTGTTTTCAGTTTTATCAAGATTTGCGTGGGTACGTCACTGATCTGGTAGAATGTCTTGATGAAAAGattcCTATACTTGTGGGATTAGAACAACGTATATCTAAGATGTATGAAAAGAGACGTACAGATTTGGTAGCCAGACGTAGACAAGATGTTCGTGATCAAGCTGAAGAATCTTCAACtagtaAATTAGGAACTTCAACAACACATACAAGATCTGAAGAACAGCAAAGAAGAGCTGCAGAGCGTGAAGGTCGTCGTATCAGACGTATGAGAATGAGAGAGATAAAAGCTATAAGTAAACATGCAGATGGAATGTCTAGTGATGAAGAAGTTCCTGAAACAGATGCGTCAGCATTTAGAAAtcaattagagCTTATTAAAAGTGACTCGAACATGTTATTGGATGATGTTCTTGAAGAATTTGCTTCAGTTGATTTAGTGTTAAAACACATGTTAGAATGGAAAAACAAGTATTTGGATAGCTATATAGAAGCATATGTTAATGTGTGTTTACCTAAGTTAGTGGGACCTTTTGTTCGTTTAGAAATGCTTACATGGAATCCATTAGAAgaTGATCTGAAGCTTGAAGATATGTTTTGGTATAAAAGTATGCAAAAGTATACAATGAAAGgaaataatagtattgatCAGTTGACAAAAGATGTTGATCTAGAACTCATCCCCAAAGTAATAGAAAAAGTCGTGCTCATTAAAATTGATcaaatggtTACGAGTCAGTGGGATCCGTTGTCttcaaaacaaacaaaacatatCTGTAACATTGTTAAGCATATACTGGACATGTATCCCACTATTGATCCAgatagtaaattattgatgATGTTATTGAACAATTTAGTGGACAGAATACGAGATGCTGTTGATTATGATGTGTTTATACCAATATCTTCTAGACAagTAATGAATACTGGTCgtatgaatgtattttttcaaagaCAGTTTAACATGGCTGTAAAATTATTGGGAAATATTTTGAGTTGGCATCGAATTATCGAAGATGttgtattaattgatttagctataaatcaaatacttaATAGATATTTGCTAACATCTATTCGAACATTACAGCCACTAGaagctattttaaaaataacaatgatTGCTCGTACACTACCTACTTCATGGTTGTCGTATGGAAACACTACCCCTAAAGAATTAACaccatttttaaatcagtCAAAATTAGTTTCAATGGAAATAGATAAATCACATCCTCAGGCAAAaCTTGCGCTGGATAAACTCAACGAAGTCCTCAGACTATGA
- Protein Sequence
- MAMQFRKPKRNLRVRDIDGFHENENEEKVDVDTVLKLPKPQKEKTTKKVNTLSFGDELNECDDGEEFKVKKSSYSKKIKKQMNKEKMGRDKVENGKKSKNIADTMKPIVVKQTNFNSEPVEKEIMLTGRAAEMAGYVSSDEEPDSYSSSSHRFSNPDQVKILLKKGQIPDAALIHAARKRRQQARDLGEDFIPISSQSHGESKVDNEQTTNRRLTREEDELEDSDDDGIIVMSGIVSQAEDRKKNLHITMADHTNNTEFEDPDELDEDNDWETQQIRKAVTGSQLAAAQQESAGMAAFYNNMVIQEQAMMPILMNQKPRFSDSYAPQGLMSTMNPDDIINKTKEILNELKENRNPDQKYFEDMINEIPEIKNRVEMLKINVPELDDCFQFYQDLRGYVTDLVECLDEKIPILVGLEQRISKMYEKRRTDLVARRRQDVRDQAEESSTSKLGTSTTHTRSEEQQRRAAEREGRRIRRMRMREIKAISKHADGMSSDEEVPETDASAFRNQLELIKSDSNMLLDDVLEEFASVDLVLKHMLEWKNKYLDSYIEAYVNVCLPKLVGPFVRLEMLTWNPLEDDLKLEDMFWYKSMQKYTMKGNNSIDQLTKDVDLELIPKVIEKVVLIKIDQMVTSQWDPLSSKQTKHICNIVKHILDMYPTIDPDSKLLMMLLNNLVDRIRDAVDYDVFIPISSRQVMNTGRMNVFFQRQFNMAVKLLGNILSWHRIIEDVVLIDLAINQILNRYLLTSIRTLQPLEAILKITMIARTLPTSWLSYGNTTPKELTPFLNQSKLVSMEIDKSHPQAKLALDKLNEVLRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01499641;
- 90% Identity
- iTF_00940493;
- 80% Identity
- -