Msac009085.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- arid3a
- Assembly
- GCA_002803265.2
- Location
- NW:1904710-1976872[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-26 4.5e-23 80.8 0.0 2 89 175 260 174 260 0.96 2 2 0.66 9.7e+02 -0.3 0.3 67 86 324 345 311 346 0.70
Sequence Information
- Coding Sequence
- ATGAAAATGACAATGGATGCCACAGATAGCGCAAGACTTGGCTTAAACTTGAATTTGAGTGTGCAACCTCAATCATATCATTGGATTCAATCACCTAAGGGTACTGATGATGAGGACGAGGATGACCGTAGAAGAGTGGATGACGATTGTTCGCCGGAAGAAGAACCGGATATCCTGGAAATGCagAGGGAAGAACGTGAAACCCTTAATCAGTTAGCTCGTCGTTTGGCAAGTGGGTCACATGGACTGATGGGAGGTCACACTGCATCTATGATACAACATTTGGTTTACCATCATCCTAATGGGATGCCTATATCCGATCAAATCGTCATGCCAATACCTTCTAGACGACCGGGCAACATAGAATCACCACCAGGATCTAGTCGATCAGGTGATACACCTCTTGGTCACGAATACACATCAGAAAACGAGTCATCTCTGTTAGCTAGAAAGGGTGAAGCACAATCGTGGACTTTTGAAGAACAGTTTAGACAGctttATACTGCGGGCAACGAAGCTGATAGACGCAGTTTCCTGGATTCACTGTTCAGTTACATGCAGGAACAAGGGACTCCGATAAGCCGACTACCCATTATGGCTAAACGTGTGTTGGATCTGTACACGCTGTACAAATTAGTCGTACAAAGAGGAGGAATCGTGGCGGtcattactaaaaaattgtgGCAAGAGATAATCCGAGGTTTGGGCTTACCGCCTTCCATCACCAGCGCGGCTTTTACGTTGAGAACacaATACGTCAAGTACTTGTACGCGTACGAGTCGAAAATGAATCAGTTCAGCACGGTGGACGAACTGAACATGGCCATAGCGGGCAACCGGCGCGAGGGCCGCCGGAACAAGTCTCTGATGTCCGAGTACATGCCCGCGCACCCGGCGACCACGGTGGCCGGCCATCTGCACCACCACGGCCAACTGCCGCCGGCGGCGCACGGCCACGGTCACCAGCAACAGCAGCACCATCACCAGCAGcaccagcagcagcagcagcagcagcactACGCCAACGTGCTGGCCGCCGACGATCGGTTCCGTCACTTGGCCGCCGCCATCATCGACAACAACAGACACCGCGCCGCCACGGAACAGGGCAGACAGcagccgtcgtcgtcgtcttcgtcgtcgcctccgccgccgccgccgccgcggcCCGGAAGTCCGATGCAACGGCTGTCCCAACTACAGCCACAGCCGCCGCCGTCCGCAGCCGCCGAATCGTCGCCGTTGTTCAACGGCCACCAGCTACAACTGCCGCCGTACCAATCGGCCACCATGATGGCCGCTGCGGCACACCAGGTAGCGGCCGCCGGTGACCACGGCAGCAAACAGAGagaaattctCAGTATGTTGATGTGGATGGATTTAATGAGAGTTAATCAAACAGCTATTCCAAGACTTTCAATACAAAACTTGCAACAAGCATGCAACCCGTCACCATACGCCACAGTACCAGCTGCGATGAATCTGCAACGTCAGTCTCCGGTCGCGTTGCATTCGAATAACGGGCCAGAACAGTGTGAAGCGTTGAATTTAGGCAAAAAGGATCAAGGGACGAACAACAACAACGCGGGTGAAAACGAGGACGAACCGGATCAAAAACGCATCAAGAAGGAACGGTCGCCACGAGTTATCGTGGTTAGTCGTTCCGCCAGCCCCAAAGCAAGCCCTGAACCATTTCCGGCGCCAACGGCAAGCAGCCCCATACGGGAGGCAGCTACATCGCCTGAACGAAATGGTGACGACCAAGAAACGGACAGCAACGGTACGATCGAAATGGATATCAACGTGACGGCCGGCACGCCTAGCGGACTCAAAATAAACGTCTGTAAAAGAACAAAACACGGGATTTACAAAGGTCAACTTATCAAAGTCGAGTCAGAGTTAAATGGaggaATGAAGAACACTAGACCCTTTATTTTGCGCCTTAATGGTGAACTCTACAGAGGATGCCTACAACCACAAAGCAGTGTTGATAATCATGACGATCAACATTCTAGTTAA
- Protein Sequence
- MKMTMDATDSARLGLNLNLSVQPQSYHWIQSPKGTDDEDEDDRRRVDDDCSPEEEPDILEMQREERETLNQLARRLASGSHGLMGGHTASMIQHLVYHHPNGMPISDQIVMPIPSRRPGNIESPPGSSRSGDTPLGHEYTSENESSLLARKGEAQSWTFEEQFRQLYTAGNEADRRSFLDSLFSYMQEQGTPISRLPIMAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESKMNQFSTVDELNMAIAGNRREGRRNKSLMSEYMPAHPATTVAGHLHHHGQLPPAAHGHGHQQQQHHHQQHQQQQQQQHYANVLAADDRFRHLAAAIIDNNRHRAATEQGRQQPSSSSSSSPPPPPPPRPGSPMQRLSQLQPQPPPSAAAESSPLFNGHQLQLPPYQSATMMAAAAHQVAAAGDHGSKQREILSMLMWMDLMRVNQTAIPRLSIQNLQQACNPSPYATVPAAMNLQRQSPVALHSNNGPEQCEALNLGKKDQGTNNNNAGENEDEPDQKRIKKERSPRVIVVSRSASPKASPEPFPAPTASSPIREAATSPERNGDDQETDSNGTIEMDINVTAGTPSGLKINVCKRTKHGIYKGQLIKVESELNGGMKNTRPFILRLNGELYRGCLQPQSSVDNHDDQHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167383;
- 90% Identity
- iTF_01303965; iTF_01328392; iTF_01305326;
- 80% Identity
- -