Sgrm016218.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- arid3a_1
- Assembly
- GCA_003264975.1
- Location
- QEWZ01001386.1:5562952-5610538[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-26 1e-22 80.8 0.0 2 89 189 274 188 274 0.96 2 2 0.65 2.1e+03 -0.3 0.6 69 86 334 355 315 356 0.66
Sequence Information
- Coding Sequence
- ATGTTCTACGTAGagttaagtaCCGATTTGCCAATTGACTGTATGAAAATGACAATGGATGCCACAGATAGCGCAAGACTTGGCTTGAACTTGAATTTGAGCGTGCAACCTCAATCATATCATTGGATTCAATCACCTAAAGGTACTGATGACGAGGATGAAGATGACCGTAGAAGAGTGGATGACGATTGTTCACCGGAAGAAGAACCGGATATCCTGGAAATGCAGaGAGAAGAACGTGAAACCCTTAATCAGTTGGCTCGTCGTTTGGCAAGTGGATCACATGGATTGATGGGAAGTCACACTGCATCTATGTTACAACATTTCGCTTACCGTCATCCTAATGGTATACCTATGTCTGATCAGATTGTCATGCCAATACCCTCTAGACGACCGGCCAATATAGAATCACCACCAGGATCCAGTCGATCAGGTGACACACCACTTGGTCATGAATATACGCCGGAAAACGAATCGTCTCTGTTAGCCAGAAAGGGTGAAGCACAATCTTGGACTTTTGAAGAACAATTTAGACAGCTATATACTGCAGGCAACGAGACGGATAGACGCAGTTTCCTGGATTCACTGTTTAGTTACATGCAGGAACAAGGGACTCCGATAAGCCGACTACCCATCATGGCTAAACGTGTGTTGGACCTGTACACGTTGTACAAACTAGTCGTACAAAGAGGAGGAATTGTGGCGGTCATCACTAAAAAATTGTGGCAAGAGATAATTCGAGGCTTGGGCTTACCGCCGTCCATCACTAGTGCGGCTTTCACGTTGAGAACtcaATATGTCAAGTACCTGTACGCGTACGAGTCGAAAATGAATCAGTTCAGCTCGGTGGACGAACTGAACATGGCCATAGCCGGAAACCGACGCGAGGGCCGCCGGAACAAGTCTTTGATGTCCGAGTACATGCCCGCGCTCCCAGCGACCACGGTCGCCGGTCACCTGCATCACCACGGCCAACACCACAATCACCAGCAACAGCAGCATCATCACCAGCAACAGCAGCACCatcagcagcaacagcaacagcactACGCCAACGTGCTAGCCGCTGACGATCGGTTCCGCCACTTGGCCGCCGCCATCATAGACAACAAAAAGCGCGCCGCCACGGAACAGGGCAGACAGcagccgccgtcgtcgtcgtcgtcgtcgccgcgtCCCGGTAGTCCGATGCAACGACTGTCTCAGctgcagccgccgccgccgccgtccacGGCCGCCGAAGCGTTGCCTTTGTTCAACGGCCACCAGCTACAAATGCCGCCGTACCAATCGGCTACGATGATAGCTGCCGCGGCGCATCAGGTAGCGGCCGCCGGCGACCACAGCATCAAACAGAGAGaaattctCAATATGTTGATGTGGATGGACATAATGAGAGTTAATCAGACAGCTATTCCAAGACTTTCAATACAAAACTTGCAACAGTCATGCAGCCCGTCACCATACGCCACCGTACCAGCCGCGATGAATCTACAACGTCAGTCTCCGGTCGCGTTGCATTCAAATAACGGACCGGAACAGTGTGAGGCATTGAATTTAGGTAAAAAAGATCAAGGGACGAACAACAATAACGCAGGTGAAAACGAGGACGAACCGGATCAAAAACGCATCAAAAAGGAACGGTCACCACGGGTTATCGTGGATAGTCGTCCCACCAGTCCCAAGACGACAAGCCCTGAACGATTTCCGGCGCCGACCATAAATAGTCCGATACGGGAGTCATCTACATCGCCTGAACGGAATGGTGACGACAAAGCGGTGGACAGCAACGGTACAATCGAAATGGACATCAGCGTGTCAGCCGGTACGCCCAGCGGTCTCAAAATAAACGTTTGTAAAAGAACAAAAGATGGAATTTACAAAGGTCAACTTGTCAAAGTTGAATCAGAATTAAATGGAggaaTGAAGAACACTAGACCCTTTATTTTGCGCCTCAATGGTGAACTCTACACAGGATGCCTACAACAACAAAGCAGTCTTGATAATCATGACGACCAACATTCTAGTTAA
- Protein Sequence
- MFYVELSTDLPIDCMKMTMDATDSARLGLNLNLSVQPQSYHWIQSPKGTDDEDEDDRRRVDDDCSPEEEPDILEMQREERETLNQLARRLASGSHGLMGSHTASMLQHFAYRHPNGIPMSDQIVMPIPSRRPANIESPPGSSRSGDTPLGHEYTPENESSLLARKGEAQSWTFEEQFRQLYTAGNETDRRSFLDSLFSYMQEQGTPISRLPIMAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESKMNQFSSVDELNMAIAGNRREGRRNKSLMSEYMPALPATTVAGHLHHHGQHHNHQQQQHHHQQQQHHQQQQQQHYANVLAADDRFRHLAAAIIDNKKRAATEQGRQQPPSSSSSSPRPGSPMQRLSQLQPPPPPSTAAEALPLFNGHQLQMPPYQSATMIAAAAHQVAAAGDHSIKQREILNMLMWMDIMRVNQTAIPRLSIQNLQQSCSPSPYATVPAAMNLQRQSPVALHSNNGPEQCEALNLGKKDQGTNNNNAGENEDEPDQKRIKKERSPRVIVDSRPTSPKTTSPERFPAPTINSPIRESSTSPERNGDDKAVDSNGTIEMDISVSAGTPSGLKINVCKRTKDGIYKGQLVKVESELNGGMKNTRPFILRLNGELYTGCLQQQSSLDNHDDQHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01167383;
- 90% Identity
- iTF_00972832;
- 80% Identity
- -