Mpla013625.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963662105.1
- Location
- OY759209.1:68783900-68785093[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-105 1.3e-101 340.7 25.0 1 299 30 321 30 322 0.91 2 2 0.18 1.5e+03 -1.0 3.4 222 244 352 374 325 396 0.48
Sequence Information
- Coding Sequence
- ATGGATAACTCTGGGTTCGTTGGTCGGCGACGTGCCACTTCCCGCGTCAATGCTGAAGATCAAGCACTTGATCAAATTGCCAAAGAGGCGGAGGCACGTTTAGCAGCGCGTCGACAGGCACGTGCTGAGGCTCGCGAGGTTCGAATGCGCGAATTGGAGCGACAGCAGAAGCAACTGGAACAAAATGCAGATCGTGTATTCGATATGAGTATCGATTCCCTGCCTCGAACCCGTCTTGTAACTGGTATAAGTGTTGGCGGCGGTTCACCCGTGACACGTGCTAGTTCAATGTCATCCCGGCGCAGCAGTGAAGATTCTCTCCAAGATGATGAAACGGCCGCGACGGGACGTAGTTTGCGTGAATTGCGCCATGAACTGCGTGATGTTGAAGAGCGCTTCCGTAAAGTTATGATAGCAAACGCTCAACTAGATAACGAGTGTGCTTCGCAAGTGTATCAGATACAGTTATTAAAAGATAAACTCGAGGAGGTCGTAGAGTCATATGCACAATTGCAGCgggaattcaaagaaaaaagtcgAGATTGTAATGCGCTTAAGCGAAGTGTGGATAAATTACAGGAGGAACTTAAGCTGGTGCAGGGTCAGCTGGCAGAACGTGACACTCTCATTACCGATCAGGGTTTGGTTATCGTTTCCGTAGAAAATGAAGACGGCACTGATGCCAAGCGTGCATTAGTCACACTAGACAATGCACAACTTTTAGGTTCTGTGCAAGGTTCCTTGGATAAGCGACTGAAAAAGTTCAATGAGGAAAAGCAACAACTCTTAGCAGAGGTACAAAATTTACAACAGCAGTTAGACAGCTATAAAGGTCGGGGTGGTAGTAGTTCAATAAATGGTCCTGGCTCGAACGATGACGTTGAGTATGAAGCTCAACGGGAAGCCAATAAAATGTTATCCGATTACAAATACAGATTGCAAAAAGCAGAACAAGAAGTCGCTAGCCTACAGGCCAGTTTAGCAAGGTCGGAAACGCAAGTAATACGTTACAAGAGTACAGCAGAGGCGGCAGAAAAGGCGGAAGCAGATCTGAAAATTGAACGAAGAAAACTTCAGCGAGAAAATCGTGAAGCTATGGAACGTTTAGAAGAATTGGAAACATCAAATAATCACCTGCTTAAACGTCTTGACAAATTGAAGAACGCGAAAAGTGCATTGCTTAAAGATCTTTGA
- Protein Sequence
- MDNSGFVGRRRATSRVNAEDQALDQIAKEAEARLAARRQARAEAREVRMRELERQQKQLEQNADRVFDMSIDSLPRTRLVTGISVGGGSPVTRASSMSSRRSSEDSLQDDETAATGRSLRELRHELRDVEERFRKVMIANAQLDNECASQVYQIQLLKDKLEEVVESYAQLQREFKEKSRDCNALKRSVDKLQEELKLVQGQLAERDTLITDQGLVIVSVENEDGTDAKRALVTLDNAQLLGSVQGSLDKRLKKFNEEKQQLLAEVQNLQQQLDSYKGRGGSSSINGPGSNDDVEYEAQREANKMLSDYKYRLQKAEQEVASLQASLARSETQVIRYKSTAEAAEKAEADLKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486175; iTF_00972193; iTF_00257821;
- 90% Identity
- iTF_01486175;
- 80% Identity
- -