Csim011909.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951812925.1
- Location
- OX638368.1:104404434-104405639[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-108 9.9e-104 348.1 25.3 1 299 30 325 30 326 0.93 2 2 0.16 2.4e+03 -1.2 3.6 135 158 360 383 329 400 0.49
Sequence Information
- Coding Sequence
- atggaTAGTTCTAACTCTGGTGGTAGGCGACGGGCTACTTCCCGTGTCAATGCGGAGGATCAAGCACTTGACCAAATCGCCAAGGAGGCAGAAGCGCGACTGGCGGCACGTAGGCAAGCTCGTGCTGAGGCACGCGAAGTTCGAATGCGCGAATTGGAACGTCAGCAAAAGAAACAAGAGCAAAATGCAGATCGTGCGTTCGACATGAGCATCGATCCCCTACCCCGAACTCGTCTAGTAACAGGCATAGGTGTTGGTGGCTCACCAGTAATTCGTGCCAGTTCAATGTCCTCTCGGCGCAGCAGTGAAGATTCTCTGCAAGATGATGAGGCGGCAGCTGCTGGACGTAGCTTTCGTGATTTGCGTCATGAACTACGAGATGCAGAAGAACGCTTTCGGAAAGTTATGATTGCTAACGCTCAACTAGATAATGAATGCGCTTCTCAAGTGTATCAGATTCAGTTGCTCAAAGATAAATTGGAGGAAGTCGCAGAGTCATATGTGCAGCTGCAGCgtgaatttaaagaaaagagCCGAGATTGTAATGCTTTTAAGCGAAATGTGGAAAAATTGCAAGAAGAGCTTAAGTTGGTGGATGGTCAACTAAAAGAACGTGACACGCTGATTACTGAACAGGGTATGGTAATAGTATCCGTAGAAAATGTAGATGGCACAGATGCCAAGCGTGCACTAGTTACAGTAGACAATGCACAACTTTTAGGTTCTGTGCAAGGCTCTCTAGATATGCGACTGAAGAAGTTCAATGAGGAAAAGCAGCAGCTCCTATCTGAGGTACAAAATTTAAACCAGCAGTTAGATAGCTATAGGCAGCAAGGCAATAAAAATCGAAGTGGTGGTAGTTCAGTGAATGGTCCCGGATCAAACAATGACGATGAGTATGAGGCACAACGAGAAGCCAACAAAATGTTATCCgattataaatacaaattgcAAAAAGCAGAACAAGAAGTCGCCAATCTACAAGCCAGTTTGGCAAGGTCGGAAACCCAAGTAATTCGTTACAAGAGTACAGCAGAGGCAGCTGAAAAAGCGGAAGCTGAATTGAAATTTGAACGGAGAAAACTACAGCGAGAAAATCGTGAAGCTATGGAACGCTTAGAAGAACTGGAAACGTCAAACAACCACCTGCTTAAACGTCTGGACAAATTGAAGAACGCGAAAAGTGCATTGCTTAAGGATCTTTGA
- Protein Sequence
- MDSSNSGGRRRATSRVNAEDQALDQIAKEAEARLAARRQARAEAREVRMRELERQQKKQEQNADRAFDMSIDPLPRTRLVTGIGVGGSPVIRASSMSSRRSSEDSLQDDEAAAAGRSFRDLRHELRDAEERFRKVMIANAQLDNECASQVYQIQLLKDKLEEVAESYVQLQREFKEKSRDCNAFKRNVEKLQEELKLVDGQLKERDTLITEQGMVIVSVENVDGTDAKRALVTVDNAQLLGSVQGSLDMRLKKFNEEKQQLLSEVQNLNQQLDSYRQQGNKNRSGGSSVNGPGSNNDDEYEAQREANKMLSDYKYKLQKAEQEVANLQASLARSETQVIRYKSTAEAAEKAEAELKFERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972192;
- 90% Identity
- -
- 80% Identity
- -