Mlag015741.1
Basic Information
- Insect
- Megachile lagopoda
- Gene Symbol
- MBD-R2
- Assembly
- GCA_036983795.1
- Location
- CM072795.1:9125166-9135141[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.92 4.1e+03 -2.0 0.1 44 60 406 422 403 440 0.79 2 3 3.4 1.5e+04 -3.8 0.0 40 50 446 456 445 466 0.82 3 3 1.4e-17 6.4e-14 51.9 0.2 6 69 546 609 541 617 0.91
Sequence Information
- Coding Sequence
- ATGAAGCGGCGGCGTATAGCGCGGTCGCGTGGTAAAGGGATACCGCCTTTGAGGATGATGAAAATGGCGCGCAAATGTTGCGTGCGTAGCTGTGAGGTTGATGTGCAAGATGCTCGAGCCAAGGGTTTACCGCTTCATAGGTTTCCAAAAGACAGCAATTTGAGAAGTAAATGGTTAGCCAGTGGTGGATTCGAGACAACTTTTAAACCTTCACCGGGTCAGGTTGTCTGCCACAGACATTTTAAACGTGCTGATTACGAAGCCGCTAAGGGACATAAATTACTTCTGCGTAAAGGCAGTGTTCCGTCAGTTTTTGCAGATTATGACAATCATCCAGATCCTGTGATTATGTCTGTGAAATCATCAACTTCTTATGCGCAGGAGGATTTGGATCTCATTAATTctgagattttaaatttagagcaATCTATTTCACCATTGGTATCTGAAGCAAAAACACAAAAGATTGATACCTGTAAAGAAACATGTTCTTCTGAACCAGCATTATTAGCTGATTCTTCTAATGAGTTAGATTCCAAAGAAATACTTGACAatggatataaaaattcgaatgtaaaagaaaaaaacagtataaaacaagaaaaagtTCCTGCACAACAGGAAGTTAATGAAAATTCGGAAGTACAAGTAAATACTGTTGCAGTGCAGTTAGGAATTGTAGAATCAGATATAGCAATGAAggatatacaaaaaaatttgatcataaaagaagaattaaaaaacgtTAAAATGGAGGATGAAAAAGTATTTGAGAAATCAGATGAATTAAAACCAAAGATTTTGAACCGAGgtggattaaaattttttcctGGTGCCAAATTAGAAGCAAAagatttcaatgaaaaatgGTATTCAGCTAAAGTAGTAGAAACTGATTGGGATGAAAGAGAAGTCTTGATTCATTTCGATAAATGGAGCTCAAGATTTGATGAATGGATACCTATGGATAGCTCCAGATTACGTGTATTACAAACACAATCAAAtGAAGAAACTTGGGATCTACCATCTTCggaagaaaaaatgaaagatttttcAGTAGGAGAAAGGATACTTGCTACATGGGCTGATGGTAGAAAATATCCAGCCAAAGTGAATGCAGTTTTAGGGAATGATAGGTATGATGTACTCTTTGATGATGGATATGCAAAGACAGTTAAATCgtcaaaaatgacaaaaattactCCAACATCCACAAAGCAATTTAATCAAACCGAAGAATATATAGGAAGCAAACAAGAAAGAAGagataagaaaagaaaacatacAGTCATGGAGTTATTTCATACACATTCTAGAAAACGGACAAAAAATGAAGGagataaattatcaaaaaaacAAGAGGTAGCAATACATGAAAATGGAGATGTACcagaaaaaattgatttagaTGGTACTTTGTTTGGTCCTTGTTATGATCCTGGAACGGATCTGTTACGAGGATTTGACACTAATATAtctaaaatgaaaagttttcCAAAAAAGAGCAAGAAAGATATCCCAAGAACTGATATAAGTCAGGAAGATGATGTAGGACCCGAGTGGATAGATGGAGAACCACAAGGAACTGAATCTTATATAGTAGATGGAAATGATGGGCCTCGTCGCTCAATAATCGTTGCAGATAAAAGATTACCGCCTGGATGGCAAAAACATTTTACGCAAAGAAAAGCCGGTACATCTGCTGGAAAATGGGATGTCTTATTTCTTCATAAATCAAGTGGAAAGAAGTTTAGATCACGAAACGATATCAAAGTATTTCTGGAAAACCAAGGGCAGTTTGATTTTGATcctgagaaatttgatttttgtattcatcggaaaaagaaaaactacgggcaaaaaataaaacaacctATTACCATGGATGTACCAAAAAAGATAAAAACTTTATTACCTAAAACAAAAGCACCAGCATCGGAAGATTCGTTGCTGGTTTCAACAAGTACACCAGTTACAACTTTAGTATCTACATCAACAACATCTATCACAGATGGTGCCGTTTTCATTGGTGGACTTCGCGTAGAAATGGAGGACAGTGCTTACAAATGTCCAAAGCAGGGatgtaataaaacatttcgTAAAGAGAATCTTTTACAAATGCATATAAAACATTATCATccagaatattcaaaatttttgggATCTACGCCAAATGTTGCAGATTTAGCGTACGCACGAACAATTGGGGAATCCGTTGAAGATATTATTccgaaaaaatcaaataatttactaGACAAATGTAATAAACTTGGAAAGAAAAAACCTGTTCATGAGAAAGCATTATATACTGCACCATCATCTCTAACGACTTTTGTTCAATCTACGTCAccaaaagtaattttatcaaCGACATCAGACATAGAAGATGAAATAGATCAAGTAGAAAAAAGTAATGATGTACCAGCAGAAGACATTAAATCAGAAAGAATGTCTCCAATTTCGAGCTATAGCGTCGATATGgatgatgaaattgaaaagaaacgagatGCTTCTGCAATGTCCCCTGGAACATTATTTGACATGAAAATCAAAGAAGAAAGAACACAAACTGGCATTAAAACTCTTCTTCCTGTAAGACCGGCAGTGTCTTCAGAGATACAAAGGATTGATAGACCAAAATCTTTAGATgaagttattaatattgatagaATGAAGGGTCAACGAAAACGACAATTGTCAGAATACAGTTCTGATGGATTAAATAGGAATAAACGACGTCAAGGTATTCAAGAACTAGATGAATATGGTGATTTAGATGATAGTGCTTTGGATACCGATGAACCGACGACGCTTACATATAGATATAGTCGCAGAAAATCAGATTCCAGAAGTGATGAAAATAGCCAGAGTAgTCAACTAAATGATTCTCGCGTTGAAAAAGATGATACTTTGAAAGGGGATATTGCTAAAAAAGATACTAATGATAGGGaagaaACTGAAGGTGTTATGATGATGATTAATGGAGAAATGATAAAGGTTGAACAACTGCGTagagaagaaataataaattgtacctGTGGATTTATGGAAGAAGATGGTTTAATGATACAGTGCGACCTTTGTTTATGTTGGCAACACGGGCATTGCAATGCaatagaaagagagaaagatgTACCcgaaaaatatgtttgttatatttgtCAAAATCCATATCGACAACGGCCATCTAAAAAGTATTTTCACGATCAAGATTGGGTGAAGGAGGGAAAGCTGCCAATGTTATCTGATCGAACAAAAAATCagtatcgaataaataaaagaacggCTATGTTGAAACGTTCTTATGATTTAGTTGCGTCTCTTTTACAAATACAGCAAGTTTTACATAGTTTAAgagtaaaaattaatgtagcTCAaaaaaaggATCATCCAAAGTTGTACCTTTGGgcgaaaaattgggaaaaagTGGAAGTACCAAAACCAGATATAACACCAGTACCAATAATGGAAGTTACCAAATCAGGAAAGGATGATTCAGATAGTACAATTGAAACTTCTCGTCGAGTTGAAGTGAAGACAGAAATAAAGTTTACTTTAAAGGATAATcacgatgaaaaattaatagctTCAGACTCAGAGttgatgaaaattttagagGAAGATAACCCAACTTCGGACGATTCCAAAGTTTCCTGCAAGAAAGAAGATCTgacgaatgaaaataaaagtcaTATTCTTCTTGATGCACTCACAAAAAGTGCTGTTGCTgaagaaaagtataaaaattcagcGACTTCGGAAATGAAAACGGATACAGatttattaaacaatCAAAACATTGTATCAGAAAATGATATACCTATACCAGCTGCTTCAGAAAACAGCATGcatgaagaattgaataaacaCGAAACATCGACACCGATACAGCCTTTTATTCCACAACCTGAAGCGCCAATTGACCCAGGGGAATGCCGAATGCGATTGTTAGaacatattgaacattttcaaaatcatataGATGCAAGATTAACATTTATTGAGGCACAAGTTTGTgcatTAGAAACTATGGATCCTGAAGATGTATCTAGTCCAGATATTCAACCACGAACAAAACAAACAGTTCAAATGCTGCTTCGAGATTTAAATACAGTACGAAAGTTAGCTGCtctatgttaa
- Protein Sequence
- MKRRRIARSRGKGIPPLRMMKMARKCCVRSCEVDVQDARAKGLPLHRFPKDSNLRSKWLASGGFETTFKPSPGQVVCHRHFKRADYEAAKGHKLLLRKGSVPSVFADYDNHPDPVIMSVKSSTSYAQEDLDLINSEILNLEQSISPLVSEAKTQKIDTCKETCSSEPALLADSSNELDSKEILDNGYKNSNVKEKNSIKQEKVPAQQEVNENSEVQVNTVAVQLGIVESDIAMKDIQKNLIIKEELKNVKMEDEKVFEKSDELKPKILNRGGLKFFPGAKLEAKDFNEKWYSAKVVETDWDEREVLIHFDKWSSRFDEWIPMDSSRLRVLQTQSNEETWDLPSSEEKMKDFSVGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYAKTVKSSKMTKITPTSTKQFNQTEEYIGSKQERRDKKRKHTVMELFHTHSRKRTKNEGDKLSKKQEVAIHENGDVPEKIDLDGTLFGPCYDPGTDLLRGFDTNISKMKSFPKKSKKDIPRTDISQEDDVGPEWIDGEPQGTESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSRNDIKVFLENQGQFDFDPEKFDFCIHRKKKNYGQKIKQPITMDVPKKIKTLLPKTKAPASEDSLLVSTSTPVTTLVSTSTTSITDGAVFIGGLRVEMEDSAYKCPKQGCNKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESVEDIIPKKSNNLLDKCNKLGKKKPVHEKALYTAPSSLTTFVQSTSPKVILSTTSDIEDEIDQVEKSNDVPAEDIKSERMSPISSYSVDMDDEIEKKRDASAMSPGTLFDMKIKEERTQTGIKTLLPVRPAVSSEIQRIDRPKSLDEVINIDRMKGQRKRQLSEYSSDGLNRNKRRQGIQELDEYGDLDDSALDTDEPTTLTYRYSRRKSDSRSDENSQSSQLNDSRVEKDDTLKGDIAKKDTNDREETEGVMMMINGEMIKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCYICQNPYRQRPSKKYFHDQDWVKEGKLPMLSDRTKNQYRINKRTAMLKRSYDLVASLLQIQQVLHSLRVKINVAQKKDHPKLYLWAKNWEKVEVPKPDITPVPIMEVTKSGKDDSDSTIETSRRVEVKTEIKFTLKDNHDEKLIASDSELMKILEEDNPTSDDSKVSCKKEDLTNENKSHILLDALTKSAVAEEKYKNSATSEMKTDTDLLNNQNIVSENDIPIPAASENSMHEELNKHETSTPIQPFIPQPEAPIDPGECRMRLLEHIEHFQNHIDARLTFIEAQVCALETMDPEDVSSPDIQPRTKQTVQMLLRDLNTVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00963847;
- 90% Identity
- iTF_01122433;
- 80% Identity
- iTF_00961875;