Mjur015464.1
Basic Information
- Insect
- Maniola jurtina
- Gene Symbol
- -
- Assembly
- GCA_905333055.1
- Location
- HG995210.1:16165126-16175641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.4 2.5e+02 2.8 1.8 3 22 443 462 441 465 0.90 2 12 0.18 8.3 7.5 1.2 2 19 487 504 486 510 0.92 3 12 0.0011 0.05 14.5 5.1 1 23 524 547 524 547 0.97 4 12 0.002 0.092 13.6 0.9 1 23 552 576 552 576 0.92 5 12 0.00021 0.0097 16.7 0.3 2 21 627 646 626 647 0.96 6 12 0.00023 0.01 16.6 0.6 1 23 705 726 705 726 0.98 7 12 2.5e-05 0.0011 19.6 0.3 1 23 732 755 732 755 0.95 8 12 0.037 1.7 9.6 0.6 2 19 781 798 780 801 0.92 9 12 0.014 0.64 11.0 1.5 2 23 808 831 808 831 0.93 10 12 0.0052 0.24 12.3 0.4 1 20 838 857 838 858 0.96 11 12 0.0098 0.45 11.4 1.8 1 21 866 886 866 891 0.92 12 12 4.6 2.1e+02 3.0 0.0 1 23 897 922 897 922 0.91
Sequence Information
- Coding Sequence
- ATGCTGTCGCACCACGACGATGACGACGACAACCACCTCTGCATCAAGTGCAATGCGACGATCATCGGCCTCGACAACTACATTAAACATAGAAAACAAAATTGCGGTAAACCCAAAAATGACCCAAAACCAGATCTACCAACCATCGATCCATTAGAACCGTCATACAGCCTTGGCGCTGATGTCTTTTTCCAATCCCTTCAATTACAGAGTAGCGTCAAAAAATCTCCACTGTCCCGACTCACTCCCCCCGCACAGACTCCTAAAGCTACCGATAAGAAAACCGCACACGCAGTCGCATCAACATCTAGAGATATCCCAAGAATGAGTCCCATAGAAAGTAATTTAAGAGGAGAAGATTGGATCGGTGGACATAGTTTAAGAATAGGAAGCAACGAAGATAACCAGACTAAACTAATAAACGCTGTTGCAAGTATAAGTGGCTCGGTCAAAAAAGACCTTCCAAGTACATCTTATAATATTAGCACTTATAATGATTATAAAGGTGATGACGAATCAGAAGAGTCCGATGACTCTGAGGATGATGAAGAAGAAGAAGCTCATGACGTGAAATGGAAACCTTCACCGAATTACACAGGCGGTAAATGGCGTCCAGCCTCTCCTGAACATGAAGATTGGGATATGAAAGACGAACAGGATCATGATCGTGATTATGATTATGATGCACCACCCCCCGAACATACGAAAGGAAAATGGGTACCGGGGGCTAATGAGAAAACACAAATTATGCAAACTACCATCCAATCTAAAGGATCCGTTCAGTACTGGTGCGGACCATGCAATCGAAGATTAGGTTCAAGGACCATTTACGAGAAACATCTCATGTCAAATTTACATATGCGTAAAGTTCTTCCAGAACATGAGCTAGAATTTTCAGGTCATTTAGAACCAATACGAAATGTAGAAAAACGTTCGACACGCCCTTCTATTTTCGCTAACGAAAGTCCAAAATTGCAGCCACATAAAAAGAAGCAAAAATTAGAACCTAAAGTAATTAAAATGAAGAAAAAGAAGAGGAAACGAAAATCTTATTTCGTTCAATGCTCAGGATGCAAATCGCGAGTACGGACACACTTAATGGGAAAACACTTGATATCCCATTATCATTTCAGAAAAGCTACTGATATAAAAAGTGACGTGGACGATCGACAGTTGATTCTTGACAATATAGAAGCCATCGTCCATCAAGCTCCCTTTCAATGCAGTCCATGCAAATTCTATACGAACTGGCTTTCAACTTTCATGCAACACTGGTATTCTGAAGAGCATGAGCTCACCGTTTCTACGATAGATGGTAGATATTGGTGCTCCTTTTGCAAGTTCGAGTGTGAAACGTCGCAAGAAATGCTGAATCATATGTCGAGTTCAGAACACAGCGAAGTTGTGGCAGTCATAAACAGATCCATGCCTATAATCATAAGGAAGAAGACAGTTTTAAGTTGCGCGACGTGTGATAAAGAATTTCGTTATAACATGGAGATTAAACGGCATTGCTTAAAAGCTGGTCACGCTCTAGCTATTACAGCTACTGATAATTACCAAGAATTACACAGGTGCCAACATTGCAAACAAAAGTTTAAATCCTCTGTTACGTTGGCAGCACATTTGAAATCTAGTCACAAGCAGAAGGCATTCTTTTGTCTCGTATGTTCAAAGACTTTTGCTACCTCGGAAGAAGCCAAGCGACATCGGCAGACTTCAGAGCACAGAATTCGTAGGAAAGAGAATATGAGTCAAAGAGGACTTGATACTAAGGATTTGAGTAAGAAATGCCCTTATTGTACTGAAAAAGTCATCTTGAAAAATATCCTGGAACTCAAAGATCATATTAGGCGAATCCATCCAAACATCAAGAAAAAATGTCCCAAATGTGGAAAATCGTTCATCTTTTCTCAAGAAGTGAGTCGACATATTCGGGACAACGCTTGCACATTCCAAAAGGCGGAGATACTAAATTCCTCCATTCTCTGGAACTGTAGCCAGTGCATCTTCACCACCGACTCTCAAGCTGAGTGTTTCTTCCACGAAGTCCTTCACACTGAACCCCTGACTGAAACTAAAAGTGATGGAAAGAATAAAACTGTTCAGAAGTACCCCTGTCCAATTTGCTCGAAGAATTTCAAGAAAGCATCCCTTCGACTACATTTAAGGCAGCACACTTTTGAAAGGCCATTCATATGCTCGATTTGTGGAGCAAATTTCACGCGTCAATCTAGTCTGGCAAATCATTCGAAGAGCGAGCATGGAGGTTTGGACTCTCGAGTCCCGAAGTTAACTCCACTGGATGTCAGGATGACTAATATTATTGTGGAGACATTAAAATGTAGCAAATGCAAGAAGAATTTTGGAGACAGCCTCGAATTAACTGAGCACTCTACCACCTGCGAGGCAGAAGAGAGACGCTGCTCCCACGATCAGTGCTCCTACATCGCGTCCACTGCAGCACAACTAAAAAGACACCTTCGAACGCATGGGGAACGTAAAAAACAGTACGACTGTCCGACTTGTGGTTTCAAAACAGACCAGGCGAGTCATATGAAGAGGCACCTCGTATGCCATGAGGGTATCAAGCCGTATGCTTGTCCACATTGCGAGTTCACTTGTGGGAGTTTGGAGAATCTGCGCAAGCACGTGCTGCGCAGTGGACGCCACCCCGGCATGCCGCTGTACCGCTGCCGCGTCGCATCGTGCAGCTTCCGCGCCGACCGCGCCGCCGCGTTGCGCGCGCACCTCGTCACAGCGCACCCTGACTCCTACGACACCAAGAGTGCTCTACTTGCTGTCAAGCGACACCTGATGAAGGAGACACCAGTTTCAACATAG
- Protein Sequence
- MLSHHDDDDDNHLCIKCNATIIGLDNYIKHRKQNCGKPKNDPKPDLPTIDPLEPSYSLGADVFFQSLQLQSSVKKSPLSRLTPPAQTPKATDKKTAHAVASTSRDIPRMSPIESNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGSVKKDLPSTSYNISTYNDYKGDDESEESDDSEDDEEEEAHDVKWKPSPNYTGGKWRPASPEHEDWDMKDEQDHDRDYDYDAPPPEHTKGKWVPGANEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRTIYEKHLMSNLHMRKVLPEHELEFSGHLEPIRNVEKRSTRPSIFANESPKLQPHKKKQKLEPKVIKMKKKKRKRKSYFVQCSGCKSRVRTHLMGKHLISHYHFRKATDIKSDVDDRQLILDNIEAIVHQAPFQCSPCKFYTNWLSTFMQHWYSEEHELTVSTIDGRYWCSFCKFECETSQEMLNHMSSSEHSEVVAVINRSMPIIIRKKTVLSCATCDKEFRYNMEIKRHCLKAGHALAITATDNYQELHRCQHCKQKFKSSVTLAAHLKSSHKQKAFFCLVCSKTFATSEEAKRHRQTSEHRIRRKENMSQRGLDTKDLSKKCPYCTEKVILKNILELKDHIRRIHPNIKKKCPKCGKSFIFSQEVSRHIRDNACTFQKAEILNSSILWNCSQCIFTTDSQAECFFHEVLHTEPLTETKSDGKNKTVQKYPCPICSKNFKKASLRLHLRQHTFERPFICSICGANFTRQSSLANHSKSEHGGLDSRVPKLTPLDVRMTNIIVETLKCSKCKKNFGDSLELTEHSTTCEAEERRCSHDQCSYIASTAAQLKRHLRTHGERKKQYDCPTCGFKTDQASHMKRHLVCHEGIKPYACPHCEFTCGSLENLRKHVLRSGRHPGMPLYRCRVASCSFRADRAAALRAHLVTAHPDSYDTKSALLAVKRHLMKETPVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00953896; iTF_00642635; iTF_00353466; iTF_00354505; iTF_01151614; iTF_00205635; iTF_01018198; iTF_01018979; iTF_01092502; iTF_00802320; iTF_01021728;
- 90% Identity
- iTF_00953896;
- 80% Identity
- -