Oiva010245.1
Basic Information
- Insect
- Oeneis ivallda
- Gene Symbol
- -
- Assembly
- GCA_029955525.1
- Location
- JARPMR010000006.1:28066571-28075193[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.4 5.4e+02 2.8 1.8 3 22 443 462 441 465 0.90 2 11 0.0014 0.14 14.1 5.5 1 23 524 547 524 547 0.97 3 11 0.0088 0.88 11.6 1.9 1 23 552 576 552 576 0.92 4 11 6.9e-05 0.0069 18.2 0.3 2 21 627 646 626 647 0.96 5 11 0.0016 0.16 13.9 1.5 1 23 706 727 706 727 0.97 6 11 1.4e-05 0.0014 20.4 0.3 1 23 733 756 733 756 0.96 7 11 0.00073 0.074 15.0 1.2 1 21 781 801 781 802 0.95 8 11 0.0053 0.54 12.3 1.2 2 23 809 832 809 832 0.96 9 11 0.0016 0.17 13.9 0.2 1 20 839 858 839 859 0.96 10 11 0.0071 0.71 11.9 2.3 1 21 867 887 867 892 0.93 11 11 4.2 4.2e+02 3.2 0.0 1 23 898 923 898 923 0.84
Sequence Information
- Coding Sequence
- aTGCTGTCGGCCCATGACGACGACGATGATAACCACCTCTGCATCAAGTGCAATGCTACTATCATCGGTCTAGACAACTACGTTAAGCACAGGAAACAGAATTGTTGTAAAAGCAAGAATGACCCCAAACCAGACCTGCCAACAATCGATCCATTGGAACAGTCATATAGCCTTGGTGCTGATGTATTTTTCCAATCACTGGAATTACAAAGTAGCGTGAAAAAATCTCCATTGTCTCGATTAACTCCACCCACGCCGATTTCTAAAGCTACCGATAAGAAAACGACACATGCAGTTCCATCAACATCCAGAGATATCCCAAGAATGAGTCCCATAGAAAGTAATCTGAGAGGTGAAGACTGGATTGGTGGGCATAGTTTAAGAATAGCAAGTAACGAGGATAATCAAACTAAACTTATTAATGCTGTTGCAAGTATAAGCGGTTCGGTCAAAAAAGATCTTCCAAACActtcatataatattagtacgtacAATGATTATAAAGGAGATGACGAATCAGAGGAGTCTGAAGACTCTGAAGATGATGACGAAGAAGAAGCTCACGGTGGTAAGTGGAAACCACCACCGAACTACACAGGTGGTAAATGGCGTCCTGCATCTCCAGATCATGAAGATTGGGATATGAGAGAAGAACACGACAACGATCGCGATTATGATTATGATGCACCACCACCCGGACATACCAAAGGAAAATGGGTTCCAGGTGCAAAcgaaaaaacacaaataatgcAAACCACTATACAATCAAAAGGATCCGTTCAATACTGGTGTGGTCCGTGCAATCGCAGATTAGGTTCTAGAGCCATATACGAAAAACATCTTATGTCAAATTTGCATATGCGTAAAGTACTTCCAGAACACGAATTAGAGTTCTCAGGACATTTAGAACCAATACGAAACGTAGAAAAACGTTCGACACGTCCTTCTATTTTCGTTAATGAAAGCCAAAATTCACAGCCacagaaaaagaaacaaaaattagaaccgaaatttattaaaattaagaaaaagaagaGGAAACGAAAATCTTATTTTGTCCAATGCTCAGGATGCAAATCAAGAGTTAGAACACATTTAATGGGAAAGCATTTGATATCACACTATCATTTCAGAAAAGCTACTGATATGAAAAGTGATGTGGATGATCGAGAACTAATTCTTAATAACATAGAAGCGATAGTCCATCAAGCTCCTTTTCAATGCAGTCCGTGCAAATTTTATGCGAATTGGCTTTCAAACTTCATGCAACACTGGTATTCTGAAGAGCATAATCTTACAGTTTCTGCCATAGATGGAAGATATTGGTGTTCCTTTTGTAAATTCGAGTGCGAAACATCACAAGAAATGCTGAACCACATGTCGAGCTCGGAACATAGCGAAGTTGTGGCAGTTATAAATAGATCAATGCCCATAATTATAAGGAAGAAGACAGTTTTAAGTTGCGCAACGTGTGATAAGGAATGTCGTTATAACATTGAGATTAAACAACACTGCTTAAAAACGGGTCATAATCTAGCTGTCACAGCCACTGACAACTACCAAGAGTTGCACAGGTGCCAACACTGTAAGCAGAAATTTAAATCATCCGTTACATTAGCGGCTCATTTGAAATCAAGACACAAGCAGAAGGCATTCTTTTGTCTCGTCTGTTCAAAGACTTTTGCCACGTCCGAAGAAGCTAAGCACCATCGACAGACCTCTGAGCACAGAGTTCGAAGCAAAGAGAATTTGACTCATAGAGGAGTTGAGTCAAAGGATTTGAGTAAGAAATGTCCATATTGTACTGAAAAAGTTATCTTGAAAAATATCCTGGAACTCAAAGATCACATTAAAAGGGTTCATCCAAATATCAAGAAGAAatgtcCCAAATGCGGTAAATCTTTCATCTTTTCCCAAGAAGTGACTCGACATATTCGAGCCAACGCTTGCACATTCCAAAAAGCAGAGACACTTAACGCTTCCATTCTCTGGAACTGCAGCCAATGCATCTTCACAACTGATTCACAAGCCGAATGCTTCTTTCACGAAGTACTTCACACGGAACCCATAACTGAAGCTAAAAGCGATGGTACAACAaccaaatcggtccagaaatACTCCTGTCCACTTTGCCagaagaattttaagaaaccgTCGCTCCGATTACATTTAAGACAGCACACTTTTGAAAGGCCTTTCGTATGCTCGATTTGTGGTGCGAATTTCACACGTCAGTCCAGTTTGGCAAATCATTCTAAGAGCGAGCACGGGGGCCTGGACTCTCGCGTTCCGAAGTTGACTCCATTGGATGTCAGATTGACCCAAATATCTCAGGAGACGTTCAAATGTAGCAAATGCAAGATGAAGTTTAGTGACAGCCTCGAATTGAACCACCACATCGCTTCCTGCGAAGCAGATGAGAGACGCTGCCCGCACGATCAGTGCTCCTTTGTAGCGTCCACTCCAGCACAGCTAAATAGACACCGTCGAACTCATGGTGAACGCTTAAAACAGTACGACTGTCCGATATGTGGGTTCAGAACAGACCAGGCTAGTCATATGAAGAGACATTTGGTTTGCCACGAGGGCATCAAGCCGTATAGTTGTCCACATTGCGAGTTCACTTGTGGGAGTCTGGAGAATCTGCGCAAGCACGTGCTCCGCAGTGGACGGCACCGCGGCCTGCCGCTGTACAGCTGCCGCGCCGCAGCGTGCGGCTTCCGCGCCGACCGTGCGGCAGAGCTGCGCGCGCACCTCACCGCCGCACACCCACAGGACTATGACGCCAAGACTGCGCTGGAGGCCGTTAAACGACACCTGATGAAGGATTCTTAA
- Protein Sequence
- MLSAHDDDDDNHLCIKCNATIIGLDNYVKHRKQNCCKSKNDPKPDLPTIDPLEQSYSLGADVFFQSLELQSSVKKSPLSRLTPPTPISKATDKKTTHAVPSTSRDIPRMSPIESNLRGEDWIGGHSLRIASNEDNQTKLINAVASISGSVKKDLPNTSYNISTYNDYKGDDESEESEDSEDDDEEEAHGGKWKPPPNYTGGKWRPASPDHEDWDMREEHDNDRDYDYDAPPPGHTKGKWVPGANEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRAIYEKHLMSNLHMRKVLPEHELEFSGHLEPIRNVEKRSTRPSIFVNESQNSQPQKKKQKLEPKFIKIKKKKRKRKSYFVQCSGCKSRVRTHLMGKHLISHYHFRKATDMKSDVDDRELILNNIEAIVHQAPFQCSPCKFYANWLSNFMQHWYSEEHNLTVSAIDGRYWCSFCKFECETSQEMLNHMSSSEHSEVVAVINRSMPIIIRKKTVLSCATCDKECRYNIEIKQHCLKTGHNLAVTATDNYQELHRCQHCKQKFKSSVTLAAHLKSRHKQKAFFCLVCSKTFATSEEAKHHRQTSEHRVRSKENLTHRGVESKDLSKKCPYCTEKVILKNILELKDHIKRVHPNIKKKCPKCGKSFIFSQEVTRHIRANACTFQKAETLNASILWNCSQCIFTTDSQAECFFHEVLHTEPITEAKSDGTTTKSVQKYSCPLCQKNFKKPSLRLHLRQHTFERPFVCSICGANFTRQSSLANHSKSEHGGLDSRVPKLTPLDVRLTQISQETFKCSKCKMKFSDSLELNHHIASCEADERRCPHDQCSFVASTPAQLNRHRRTHGERLKQYDCPICGFRTDQASHMKRHLVCHEGIKPYSCPHCEFTCGSLENLRKHVLRSGRHRGLPLYSCRAAACGFRADRAAELRAHLTAAHPQDYDAKTALEAVKRHLMKDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955058;
- 90% Identity
- iTF_00802320;
- 80% Identity
- -