Mhyp001226.1
Basic Information
- Insect
- Maniola hyperantus
- Gene Symbol
- -
- Assembly
- GCA_902806685.1
- Location
- NC:699473-711932[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.5 2.1e+02 2.2 1.9 3 22 457 476 455 479 0.90 2 12 0.087 3.3 7.9 1.2 2 19 501 518 500 524 0.93 3 12 0.00061 0.023 14.7 4.9 1 23 538 561 538 561 0.97 4 12 0.0026 0.1 12.7 0.6 1 23 566 590 566 590 0.92 5 12 0.00014 0.0054 16.7 0.3 2 21 641 660 640 661 0.96 6 12 4.6e-05 0.0018 18.2 1.0 1 23 719 740 719 740 0.98 7 12 1.7e-05 0.00064 19.6 0.3 1 23 746 769 746 769 0.95 8 12 0.0036 0.14 12.2 0.6 2 20 795 813 794 814 0.93 9 12 0.02 0.78 9.9 1.6 3 23 823 845 822 845 0.88 10 12 0.002 0.078 13.0 0.5 1 20 852 871 852 872 0.97 11 12 0.0065 0.25 11.4 1.8 1 21 880 900 880 905 0.92 12 12 1.7 64 3.8 0.1 1 23 911 936 911 936 0.88
Sequence Information
- Coding Sequence
- ATGGCGGCTTATGGCGAAACAAAGTTTCACAGTAATGAGACGATGCTGTCACACCATGACGACGATGATGACAGCCACCTTTGCATCAAGTGCAACGCAACCATCATTGGCCTCGACAACTATGTTAAACATAGAAAACAGAATTGTGGTAAACCCAAAAATGACCCAAAACCAGATCTACCGACCATCGATCCGTTGGAACCGTCATACAGCCTTGGTGCTGATGTCTTTTTCCAATCTCTGCAATTACAGAGCAGCGTTAAAAAATCTCCATTATCTCGACTCACTCCACCCACACAGACTTCTAAAGCTACCGATAAGAAACCCACACACGCAGTTGCATCAACATCTAGAGATATCCCAAGAATGAGTCCAATAGAAAGCAACCTGAGAGGAGAAGATTGGATCGGTGGACATAGTTTAAGAATAGGAAGCAACGAAGATAACCAGACTAAACTAATTAACGCTGTTGCAAGTATAAGTGGTTCGGTTAAAAAAGATCTTCCAAGTACCTCTTATAATATTAGCACGTATAATGACTATAAAGGTGATGACGAATCAGAAGAATCCGATGACTCTGAAGaggatgaagaagaagaagtgcaTGACGGGAAATGGAAACCATCACCGAATTACACAGGGGGTAAATGGCGACCCGCCTCTCCAGAACACGAAGATTGGGATATGAAAGACGAACAAGATCATGATCGTGATTATGACTATGATGCACCACCTCCCGAGCATACCAAAGGAAAATGGGTACCGGGTGCTAATGAAAAAACACAAATCATGCAAACTACCATCCAATCTAAAGGCTCCGTTCAGTACTGGTGCGGTCCATGCAACAGAAGATTAGGTTCTAGGACTATTTACGAGAAACATCTCATGTCAAACTTACATATGCGTAAAGTTCTTCCAGAACATGAACTAGAATTTTCAGGACATTTAGAACCTATACGGAACGTAGAAAAACGTTCGACACGCCCTTCCATTTTTGTTAACGAAAGTCCAAAATTGCAGCCACATAAAAAGAAGCAAAAATTAGAACCGAAAGTGATCAAAATCAAGAAAAAGAAGAGGAAACGCAAATCTTATTTCGTGCAATGCTCAGGATGCAAATCACGAGTACGGACGCACTTAATGGGAAAACACTTGATATCCCATTATCATTTCAGAAAAGCTACTGATATAAAAAGTGACGAGGACGATCGACAGCTGATTCTCAACAATATAGAAGCCATAGTACATCAAGCTCCCTTTCAATGCAGTCCATGCAAGTTCTATGCGAACTGGCTTTCAACTTTCATGCAACACTGGTATTCTCAAGAGCATGAACTCACAGTTTCTACGATAGAGGGTAGATATTGGTGCTCGTTTTGCAAGTTCGAGTGTGACACGTCACAAGAAATGCTGAATCACATGTCGAATTCAGAACACAGCGAAGTTGTTGCAGTTATAAACAGATCCATGCCTATAATTATAAGGAAGAAGACAGTTTTAACTTGCGCGACGTGCGATAAAGAATTTCGTTATAACATGGAGATTAAACGACATTGCCTGAAAGCTGGTCACGATCTAGCTATAACAGCTACTGATAATTACCAAGAATTACACAGGTGCCAACATtgcaaagaaaaatttaaatcctcTGTTACGTTGGCAGCACATTTAAAATCAAGACACAAGCAGAAGGCATTTTTTTGTCTCGTCTGTTCAAAGATTTTTGCTACGTCGGACGAAGCCAAGCGACATCGGCAGACTTCAGAGCACAGGATTCGCAGGAAAGAGAATATGAGTCAAAGAGGAGTCGACACTAAGGATTTGAGTAAAAAATGTCCTTATTGTACTGAAAAAGTTATCTTGAAAAATATCCTGGAACTCAAAGATCACATTAGGCGAGTCCATCCAAACATTAAGAAAAAATGTCCCAAATGTGGGAAATCATTCATCTTTTCTCAAGAAGTGAGTCGACATATTCGAGACAACGCTTGCACATTCCAAAAGGCAGAGATACCAAACGCCTCCATCCTCTGGAACTGCAGCCAGTGCATCTTCACCACCGACTCTCAAGCCGAGTGCTTCTTCCACGAAGTTCTTCATACTGAAGTCATCACTGAAACGAAAAGTGATGGAAAGAATAAAACAGTTCAGAAATACTCGTGTCCGATTTGCTCGAAGAGTTTCAAGAAGGCATCCCTTCGATTACATTTAAGACAGCACACTTTTGAAAGGCCGTTCATATGCTCGATTTGTGGAGCGAATTTCACACGTCAATCTAGTCTGGCGAATCATTCAAAGAGTGATCATGGAGGGTTAGACTCTCGGGTTCCGAAGTTAACTCCGCTGGATGTCAGGATGACCAAAATGACTGAGGAGACCTTGGAATGTACCAAATGCAAGAAGAATTTTCGAGACAGCCTCGAATTAACTGAACACACCACCGCGTGCGAGGCAGAAGAGAGGCGCTGCCTCCACGACCAGTGTTCCTACATCGCGTCCACTCCCGCACAACTAAAGAGacACCGTCGAACGCACGGGGAACGTAAAAAGCAGTACGAGTGTCAGACTTGTGGCTTCACCACGGACCAGGCGAGTCACATGAAGAGGCACCTCGTATGTCATGAGGGAATCAAGCCGTATGCTTGTCCACACTGCGAGTTCACTTGTGGGAGTTTGGAGAACTTGCGCAAGCACGTGCTGCGCAGCGGCCGACACCTCGGCCTGCCGCTCTACCGCTGCCGCGTCGCGTCGTGCAGCTACCACACCGACCGCGCCGCTGCGTTGCGCGCGCACCTCGTCGCCGCGCACCCTGACTCCTACGACACCAAGAGCGCTCTACATGCTGTCAAGCGACACCTGATGAAGGAGGCACCAGTTTAA
- Protein Sequence
- MAAYGETKFHSNETMLSHHDDDDDSHLCIKCNATIIGLDNYVKHRKQNCGKPKNDPKPDLPTIDPLEPSYSLGADVFFQSLQLQSSVKKSPLSRLTPPTQTSKATDKKPTHAVASTSRDIPRMSPIESNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGSVKKDLPSTSYNISTYNDYKGDDESEESDDSEEDEEEEVHDGKWKPSPNYTGGKWRPASPEHEDWDMKDEQDHDRDYDYDAPPPEHTKGKWVPGANEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRTIYEKHLMSNLHMRKVLPEHELEFSGHLEPIRNVEKRSTRPSIFVNESPKLQPHKKKQKLEPKVIKIKKKKRKRKSYFVQCSGCKSRVRTHLMGKHLISHYHFRKATDIKSDEDDRQLILNNIEAIVHQAPFQCSPCKFYANWLSTFMQHWYSQEHELTVSTIEGRYWCSFCKFECDTSQEMLNHMSNSEHSEVVAVINRSMPIIIRKKTVLTCATCDKEFRYNMEIKRHCLKAGHDLAITATDNYQELHRCQHCKEKFKSSVTLAAHLKSRHKQKAFFCLVCSKIFATSDEAKRHRQTSEHRIRRKENMSQRGVDTKDLSKKCPYCTEKVILKNILELKDHIRRVHPNIKKKCPKCGKSFIFSQEVSRHIRDNACTFQKAEIPNASILWNCSQCIFTTDSQAECFFHEVLHTEVITETKSDGKNKTVQKYSCPICSKSFKKASLRLHLRQHTFERPFICSICGANFTRQSSLANHSKSDHGGLDSRVPKLTPLDVRMTKMTEETLECTKCKKNFRDSLELTEHTTACEAEERRCLHDQCSYIASTPAQLKRHRRTHGERKKQYECQTCGFTTDQASHMKRHLVCHEGIKPYACPHCEFTCGSLENLRKHVLRSGRHLGLPLYRCRVASCSYHTDRAAALRAHLVAAHPDSYDTKSALHAVKRHLMKEAPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955058;
- 90% Identity
- iTF_00955058;
- 80% Identity
- -