Mdei012095.1
Basic Information
- Insect
- Morpho deidamia
- Gene Symbol
- -
- Assembly
- GCA_029101505.1
- Location
- JAPJRL010000015.1:622722-633181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.2 2.6e+02 3.1 1.8 2 19 490 507 489 513 0.92 2 11 0.001 0.081 14.1 5.5 1 23 527 550 527 550 0.97 3 11 0.0015 0.12 13.5 1.4 1 23 555 579 555 579 0.92 4 11 4.9e-05 0.0039 18.2 0.3 2 21 631 650 630 651 0.96 5 11 0.0002 0.016 16.3 1.4 1 23 709 730 709 730 0.98 6 11 7.2e-05 0.0058 17.7 0.3 1 23 736 759 736 759 0.96 7 11 0.029 2.3 9.5 1.1 2 19 780 797 779 800 0.94 8 11 0.011 0.87 10.8 0.8 2 23 807 830 807 830 0.96 9 11 0.00067 0.054 14.6 0.4 1 20 837 856 837 857 0.96 10 11 0.0066 0.53 11.5 2.1 1 21 865 885 865 890 0.92 11 11 0.056 4.5 8.6 1.8 1 23 896 919 896 919 0.97
Sequence Information
- Coding Sequence
- ATGCTGTCGCCTCATGACGACGAAGATGACAACCATCTCTGCATCAAATGCAATGCTACCATTATCGGGCTGGACAATTACGTCaaacatagaaaacagaattgCGGGAAAGGCAAGACAAACCCAAAATCGGAACTACCACCTATCGACCCGTTAGAACCGACGTACAGCCTCGGAGCTGATGTATTTTTTCAATCATTAGAACTGCAAAGCAGTGTCAAGAAATCTTCATTGTCACGACTAACCCCACCTACACCGACTTCCAAAGTCAATATTGATAAGAAAAGCACTTTAGCAGTTGCTTCTACATCTGGAGATCTTCCAAGAATGAGCCCCATAGAGAGCAACTTGAGAGGAGAAGACTGGATCGGTGGTCATAGCTTAAGAATAGGAAGTAATGAAGACAATCAGACGAAATTGATCAATGCTGTTGCTAGTATAAGTGGTTCTGTCAAGAAGGACTTACCCAGTActtcttataatattaacacATATAACGACTATAAAGGAGACGATGAGTCAGAGGAATCCGAAGACTCTGAGGACGATGAAGAAGAGGAGCCTCATGGAGGTAAATGGAAGCCACCCCCGAATTACACTGGCGGTAAATGGCGGCCTGCTTCTCCTGAGCATGAAGACTGGGATATGAGAGATGAACAAGATCACGATCGTGATTACGACTATGATGCACCGCCACCTGGCCATACTAAAGGAAAATGGGTTCCTGGTGCTAATGAGAAGACTCAAATTATGCAAACGACCATTCAGTCTAAGGGATCTGTCCAGTACTGGTGCGGACCGTGTAATCGTAGATTGGGATCTAGAACTATATACGAGAAACATCTCATGTCGAATTTGCATATGCGAAAAGTACTTCCCGAACACGAGTTAGAATTTTCAGGACACTTAGAGCCAATACGAAGTATAGAAAAGCGGTCAACGAGACCTTCTATATTCGCTACTGAAACTATAAATTCGCAACCAcagaaaaagaaacaaaaattgttGAATCCAACACTGATTATTAAAAcgagaaaaaagaaaagaaaaaggaaatcTTACTTCATTCAGTGTTCGGGATGCAAATCACGTGTTCGAACACAATTAATGGGAAAACATTTGATATCCCACTATCACTTTAGGAAAGCCACTGATATAAAAGCTGATGTTGATGACCGAGACTTAATTCTAAACAATATAGAAGCGATCGTACATCAATCTCCATTCCAATGCAGTCCCTGCAAATTTTATACGAACTGGCTTTCAAATTTCATGCAACACTGGAATTCAGAGGAGCATGAGCTTACGGTTACGTCAATGGAAGGGAGATACTGGTGCTCCTTTTGCAAATTTGAATGTGATATATCACAAGAAATGCTCAAGCACTTGTCAAGTTCGGAACACGGCGAAGTTGTCTCTGTTATTAACAGATCCATGCCTATAATCATAAGAAAGAAAACAATCCTGCGATGTGCAACGTGTGAACAAGAGTTTCGGTATAATAGAGAAATAAAACAGCATTGCTTAAAAACTGGTCATGAATTAGCATACACAGCCACCGACAACTACCAAGAGTTGCACAGGTGCCAACATTGCAagcaaaaatttaaatcatCCGTTACGTTGGCAGCCCATTTGAAATCTAGGCATAAACAAAAGGCGTTCTTTTGTCTCGTCTGTTCAAAGACATTCAACACTTCCGAGGAAGCTAAGCGTCATCGTCAGACCTCAGAGCACAGGGTGCGGAGAAAGGAGAATATGTGTAAAAGAGGAATTGATGTTACCAATGATTTGTCAAAAAAATGTCCTTATTGTaccgaaaaagttattttaaataatatactagaaCTTAAAGATCACATTCGACGGGTCCACCCTAATATTagaaaaaaATGTCCGAAGTGTGGCAAGTCATTTATATTCTCTCAAGAGGTCACCCGACACATCCGAGCGAACGCTTGCCAATTCCAAAAGCCAGAACCGCTCAACACGTCTGTCCTTTGGAATTGTAGCCAGTGCATCTTCACAACCGACTCGCAGGCCGAGTGCTTTTTCCACGAGGTCCTTCACACTGAGCCTTTAAGGACGACCCAATGTAGCAACACGGATAAGCCAATCGAGAAATACTCCTGTCCGCTTTGTTCTAAAACTTTCAAGAAAGCTTCGCTTCGTTTACATTTAAGGCAGCATACTTTCGAGCGGCCGTTCGTTTGCTCGATATGCGAGGCCAATTTCACTCGTCAGTCAAGCTTGGCTAACCATTCTAAGAGCGAACATGGAGGCATTGATCGGGAATCGAAGTCAGCACTGGACAGCTTGAGGAAGTCGTCACAGTCAAGCTGCAGTAAATGCAAGAAGTTATTTACGGACAGTCTCTCATtaacccaccacgctgtttcCTGCGCGGCAGACGAGCGACGCTGTCCTCACGACCAGTGTTCCTACATAGCCTCTTCTCCAGCACTACTCAATAGACATCGGCGCACTCACGGCGAGCGCGTCAAGCATTACGACTGCAACATGTGCGGGTTTCGCACAGACCAGGCCAGCCACCTCAGGAGGCACCTGGTTTGTCACCAGGGGGTCAAGCCGTATGCCTGCCCGCACTGCCAGTTCACTTGCGGCAGTTTGGAGAATCTCCGGAAGCACGTGCTCCGCAGCGGAAGGCACTCCGGGCTCCCCCTTTACTCGTGCCCCACGTGCTCCTACCACACCAACCTGGCCACCGAACTCCGTACCCACTACACCACCATCCATGCTGATAGATACGACGCTAAGTCTGCTCTTGAAGCTGTCAAACGGCATTTAATGAAAGCTGATTAA
- Protein Sequence
- MLSPHDDEDDNHLCIKCNATIIGLDNYVKHRKQNCGKGKTNPKSELPPIDPLEPTYSLGADVFFQSLELQSSVKKSSLSRLTPPTPTSKVNIDKKSTLAVASTSGDLPRMSPIESNLRGEDWIGGHSLRIGSNEDNQTKLINAVASISGSVKKDLPSTSYNINTYNDYKGDDESEESEDSEDDEEEEPHGGKWKPPPNYTGGKWRPASPEHEDWDMRDEQDHDRDYDYDAPPPGHTKGKWVPGANEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRTIYEKHLMSNLHMRKVLPEHELEFSGHLEPIRSIEKRSTRPSIFATETINSQPQKKKQKLLNPTLIIKTRKKKRKRKSYFIQCSGCKSRVRTQLMGKHLISHYHFRKATDIKADVDDRDLILNNIEAIVHQSPFQCSPCKFYTNWLSNFMQHWNSEEHELTVTSMEGRYWCSFCKFECDISQEMLKHLSSSEHGEVVSVINRSMPIIIRKKTILRCATCEQEFRYNREIKQHCLKTGHELAYTATDNYQELHRCQHCKQKFKSSVTLAAHLKSRHKQKAFFCLVCSKTFNTSEEAKRHRQTSEHRVRRKENMCKRGIDVTNDLSKKCPYCTEKVILNNILELKDHIRRVHPNIRKKCPKCGKSFIFSQEVTRHIRANACQFQKPEPLNTSVLWNCSQCIFTTDSQAECFFHEVLHTEPLRTTQCSNTDKPIEKYSCPLCSKTFKKASLRLHLRQHTFERPFVCSICEANFTRQSSLANHSKSEHGGIDRESKSALDSLRKSSQSSCSKCKKLFTDSLSLTHHAVSCAADERRCPHDQCSYIASSPALLNRHRRTHGERVKHYDCNMCGFRTDQASHLRRHLVCHQGVKPYACPHCQFTCGSLENLRKHVLRSGRHSGLPLYSCPTCSYHTNLATELRTHYTTIHADRYDAKSALEAVKRHLMKAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00955058;
- 90% Identity
- iTF_01018198;
- 80% Identity
- -