Mbra005569.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- clz9
- Assembly
- GCA_905163435.1
- Location
- LR990990.1:18180017-18184175[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-09 4.8e-07 30.1 0.0 4 38 13 47 11 50 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCGCAGAAGCGCAAGCAGTACGCCTCTGCTCAACTAGAAGCTGCGCTTGTAGCTATAAATGAAGGGACCAGCATATACGAAGCTTCAAAAACCTATGGCATACCGAGGACAACTCTGCGTGAcaagagaaataataaatatataaatgaacattGTGGAAAACAAACTGTTTTAACGAAGGAGGAAGAAAAAAGACTGGTAGACTGGATTTTCTATCTCGGGAAGtcaggttttcctgtaactaaGGACCAATTGTTGGAAACAGTAGCAAAATTGGTGGAAAACTTAAATCGCTCTAATCCTTTTAAAGATGGTGTTCCCGGAAAAGGATGGTTTCTTAAGTTTATGGCGAGGCATCCTACCATTTCAAGGCGAATTACTCAGAATTTGCCTACAAGCCGTACACACATTACAGAGGAAGCTGTAAGAGCATGGTTCAATCGAGTACATagttattttgaacaaaataaccTTCTTGATGTTTTGGAAGATCCTAGTCGGATTTTTAATTGTGATGAGACCGGATTCTTTTTGTGTCCCAAAGGAAAACAGGTTCTTGTCCGAAGAGGCAGCAAGAAAGTATATAGTAGAGTGGCCAATGACGAAAAAGAGTGTTTAACAGTGCTAGTAAATGTGTCTGCAGATGCTGCAATAGCACCTCCCATGGTCTTATATCCATACAAGCGTTTACCAAAAAACATTGTTCCAACTGTACCGTCTGGATGGGGTATCGGTCACACTGAGTCAGGATGGATGAATATGGCCGCATTTTATGAGTACGTTGCCAATTGCTTTTATCCCTGGCTTATTCAGCATAACATACAATTTCCTGTAGCTTTTTTTCTCGACGGTCATACTTCTCATATATCACTCCCTCTGACAGTTTTTTGCAAAGAAAAGGGAATAATCTTAATAGCATTATTACCTAATGCAACGCATGTTCTTCAACCCTTAGACGTTGCTGTATTTAGACCTGTGAAAGGAACTTGGAGAACCGTTGTTCATGATTTTAGAGTTCAAAACAACTTTGCAAAATTAAGACGAATAGATTTTGCACCTCAAGTGGATATTTGCTTAAAAAAGACTCTTGTATCACAAACAATTAAGAATGGATTCCAATGTTGTGGATTATATCCCTTTGGACCTGATAATGTAAATTATGATAAACTTTTGACAAAAAACGCTAATGCAACAAGTGAAGAAAGTGGAGACAGTGCAGATAATATTAGTAGCCATGGATCGAGTACTGTTACAGACAACGAGAAATATGTCGACGATACAGAAAAGTTTAAACAGCAGTTTGAACGTCGCTTATCACCTGAAGTTCTCCAAATGTTCCAAAAATCGGGATCGGTATGGAATGGCGATGTGACTTACAAAAAATTATTTGAGTTTTGGAGGGATATTAATCCTGAAGACAATACATTTTTACAACAAACTTTCGATAACAATTTAGAATTGGGTGATACCACGCTTGTCAACAATATTGGTGAAGAAGAGACGTTGACTTATGAAGTCAGTGCAAATGGATGTCTTGTTCCAAACTGTTTTGATACCGTTTctaataatgttttaatgtttCCCATGGACGAATTGCTATCTCCAATTATATCTAAAGAATCAGGTACAGTATCTTTATTGAGCACTCAGCCTGAATCGAATCTTTTGGAATATGTTAATGAGATACCCCCCAAAACAGTTACTACTTCAACTGATTGCGTCAGAGAGTTAAACAGTGAAGATCACAATGCAAGAACATCAACTCCTAAACAATCCAATATAAACTTTAGTGATGAACCTATGCCTTCAGTGTCCGGAAAAAATCAACTGAATAAAAGTCATAGTGACGACACGTTGTTCACTACAGTTAATATTGAAACCCCATGTAAGTCAATCCAAAATTCTAGTCATTCAAAGTTTATACCAAAAGAGCTCAATCTTACAACTCCTTTTAAAAAAGCTCTATTCTTTCCTAAAGATGACactaaatcaaataaaagagTTTCCAAAAAAATTACACCAACTGTTGCAATATCAGATGAGTTCATGGAATACCAGAAAAAAGCAGAAGAGAAAAAAGCACaggaagaagaaaagaaaaaaatacATGAAGTGGGGGGATTTCCTGTGGATGTACCATGTTAA
- Protein Sequence
- MEPQKRKQYASAQLEAALVAINEGTSIYEASKTYGIPRTTLRDKRNNKYINEHCGKQTVLTKEEEKRLVDWIFYLGKSGFPVTKDQLLETVAKLVENLNRSNPFKDGVPGKGWFLKFMARHPTISRRITQNLPTSRTHITEEAVRAWFNRVHSYFEQNNLLDVLEDPSRIFNCDETGFFLCPKGKQVLVRRGSKKVYSRVANDEKECLTVLVNVSADAAIAPPMVLYPYKRLPKNIVPTVPSGWGIGHTESGWMNMAAFYEYVANCFYPWLIQHNIQFPVAFFLDGHTSHISLPLTVFCKEKGIILIALLPNATHVLQPLDVAVFRPVKGTWRTVVHDFRVQNNFAKLRRIDFAPQVDICLKKTLVSQTIKNGFQCCGLYPFGPDNVNYDKLLTKNANATSEESGDSADNISSHGSSTVTDNEKYVDDTEKFKQQFERRLSPEVLQMFQKSGSVWNGDVTYKKLFEFWRDINPEDNTFLQQTFDNNLELGDTTLVNNIGEEETLTYEVSANGCLVPNCFDTVSNNVLMFPMDELLSPIISKESGTVSLLSTQPESNLLEYVNEIPPKTVTTSTDCVRELNSEDHNARTSTPKQSNINFSDEPMPSVSGKNQLNKSHSDDTLFTTVNIETPCKSIQNSSHSKFIPKELNLTTPFKKALFFPKDDTKSNKRVSKKITPTVAISDEFMEYQKKAEEKKAQEEEKKKIHEVGGFPVDVPC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667348;
- 90% Identity
- iTF_00667348; iTF_01361537; iTF_01220593; iTF_01220594; iTF_01361532; iTF_01361534; iTF_01361535; iTF_01361536; iTF_00428050; iTF_01361531; iTF_01082370; iTF_01220591; iTF_01220592; iTF_00186077; iTF_00745598;
- 80% Identity
- -