Pint006860.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- clz9
- Assembly
- GCA_027563975.2
- Location
- CM050471.1:9711049-9712875[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-10 3.7e-07 30.0 0.0 4 38 13 47 11 50 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCGCAGAAGCGCAAGCAGTACGCCTCTGCTCAACTAGAAGCTGCGCTTCTAGCTATAAATGAAGGTACCAGCATATACGAAGCTTCAAAAACCTATGGCATACCGAGGACAACTCTGCGTGAcaagagaaataataaatatataaatgaacatTGTGGAAAACAAACAGTTTTAACGAAGGAGGAAGAAAAAAGACTGGTAGACTGGATTTTTTATCTCGGGAAGTCAGGTTTTCCTGTAACTAAGGATCAATTGTTGGAAACAGTAGCAAAATTGGTGGAAAACTTAAATCGCTCTAATCCTTTTAAAGATGGTGTTCCCGGAAAAGCATGGTTTCTTAAGTTTATGGCGAGGCATCCTACCATTTCAAGGCGAATTACTCAGAATTTGCCTACAAGCCGTTCACATATTACAGAGGAAGCTGTAAGAGCATGGTTCAATCGAGTACATagttattttgaacaaaataacCTTCTTGATGTTTTGGAAGATCCTAGTCGGATTTTTAATTGTGATGAGACCGGATTCTTTTTGTGTCCGAAAGGAAAACAAGTTCTTGTCCGAAGAGGCAGCAAGAAAGTATATAGTAGAGTGGCCAATGACGAAAAGGAGTGTTTAACAGTGCTAGTAAATGTGTCTGCAGATGCTGCAATAGCACCTCCCATGGTCTTATATCCATACAAGCGTTTACCAAAAAACATTGTTCCAACTGTACCATCTGGATGGGGTATCGGTCACACTGAGTCAGGATGGATGAATATGGCCGCATTTTATGAGTACGTTGCCAATTGCTTTTATCCCTGGCTGATTCAGCATAACATACAATTTCCTGTAGCTTTATTTCTCGACGGTCACACTTCTCATATATCACTCCCTCTGACAGTTTTTTGCAAAGAAAAGGGAATAATCCTAATAGCATTATTACCTAATGCAACGCATGTTCTTCAACCCTTAGACGTTTCTGTATTCAGACCCGTGAAAGGAACTTGGAGAACCGTTGTTCATGATTTTAGAGTTCAAAACAACTTTGCAAAATTAAGACGAATAGATTTTGCACCTCAAGTGGATATTTGCTTAAAAAAGACTCTTGTATCACAAACAATTAAGAATGGATTCCAATGTTGTGGATTATATCCCTTTGGACctgataatgtaaattatgataaacttTTGACAAAAAACGCTAATGCAACAAGTGAAGAAAGTGGAGACAATGCAGATGATATTAGTAGCCATGGATCGAGTACTGTTACAGGCAATGAGAAATCTGTCGACGATACAGAAAAGTTTAAACAGCAGTTTGAACGTCGCTTATCACCTGAAGTTCTCCTAATGTTCCAAAAATCGGGATCGGTATGGAATGGCGATgagacatacaaaaaattatttgagttTTGGAGGGATATTAATCCTATCGACAATACACCTTTACAACAAACTTTCGATAACAATTTAGAATTGGGTGATACCACGCTTGTCAACAATATTGGTGAAGAAGAGACGTTGACTTATGAAGTCAGTGCAAGTGGATGTCTTGTTCCAAACCGTTTTAATACCGTttctaataatgttttaatgtttCCCATGGACGAATTGCTATCTCCAATTATATCTAAAGAATCGGATACCATATCTTTATTGAGCACTCAGCCTGAATCGAATCTTTTGGAATATGTTAATGAGATACCCCCCAAAACAATTACTACTTCAACTGATTGCGTCAAAGAGTATTTAACTCTTCTAGTGAAGATCACAATGCAAGAACATCAACTCCTAAACAATCCAATAAAAACTTTAGTGATGAACCTATGCTACTACTGA
- Protein Sequence
- MEPQKRKQYASAQLEAALLAINEGTSIYEASKTYGIPRTTLRDKRNNKYINEHCGKQTVLTKEEEKRLVDWIFYLGKSGFPVTKDQLLETVAKLVENLNRSNPFKDGVPGKAWFLKFMARHPTISRRITQNLPTSRSHITEEAVRAWFNRVHSYFEQNNLLDVLEDPSRIFNCDETGFFLCPKGKQVLVRRGSKKVYSRVANDEKECLTVLVNVSADAAIAPPMVLYPYKRLPKNIVPTVPSGWGIGHTESGWMNMAAFYEYVANCFYPWLIQHNIQFPVALFLDGHTSHISLPLTVFCKEKGIILIALLPNATHVLQPLDVSVFRPVKGTWRTVVHDFRVQNNFAKLRRIDFAPQVDICLKKTLVSQTIKNGFQCCGLYPFGPDNVNYDKLLTKNANATSEESGDNADDISSHGSSTVTGNEKSVDDTEKFKQQFERRLSPEVLLMFQKSGSVWNGDETYKKLFEFWRDINPIDNTPLQQTFDNNLELGDTTLVNNIGEEETLTYEVSASGCLVPNRFNTVSNNVLMFPMDELLSPIISKESDTISLLSTQPESNLLEYVNEIPPKTITTSTDCVKEYLTLLVKITMQEHQLLNNPIKTLVMNLCYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00951744;
- 80% Identity
- -