Pint001833.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plodia interpunctella
Gene Symbol
clz9
Assembly
GCA_027563975.2
Location
CM050465.1:1053367-1055829[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.7e-10 5.4e-07 29.5 0.0 4 38 13 47 11 50 0.94

Sequence Information

Coding Sequence
ATGGAGCCGCAGAAGCGCAAGCAGTACGCCTCTGCTCAACTAGAAGCTGCGCTTCTAGCTATAAATGAAGGTACCAGCATATACGAAGCTTCAAAAACCTATGGCATACCGAGGACAACTCTGCGTGAcaagagaaataataaatatataaatgaacatTGTGGAAAACAAACAGTTTTAACGAAGGAGGAAGAAAAAAGACTGGTAGACTGGATTTTTTATCTCGGGAAGTCAGGTTTTCCTGTAACTAAGGATCAATTGTTGGAAACAGTAGCAAAATTGGTGGAAAACTTAAATCGCTCTAATCCTTTTAAAGATGGTGTTCCCGGAAAAGGATGGTTTCTTAAGTTTATGGCGAGGCATCCTACCATTTCAAGGCGAATTACTCAGAATTTGCCTACAAGCCGTTCACATATTACAGAGGAAGCTGTAAGAGCATGGTTCAATCGAGTACATagttattttgaacaaaataacCTTCTTGATGTTTTGGAAGATCCTAGTCGGATTTTTAATTGTGATGAGACCGGATTCTTTTTGTGTCCGAAAGGAAAACAAGTTCTTGTCCGAAGAGGCAGCAAGAAAGTATATAGTAGAGTGGCCAATGACGAAAAGGAGTGTTTAACAGTGCTAGTAAATGTGTCTGCAGATGCTGCAATAGCACCTCCCATGGTCTTATATCCATACAAGCGTTTACCAAAAAACATTGTTCCAACTGTACCATCTGGATGGGGTATCGGTCACACTGAGTCAGGATGGATGAATATGGCCGCATTTTATGAGTACGTTGCCAATTGCTTTTATCCCTGGCTGATTCAGCATAACATACAATTTCCTGTAGCTTTATTTCTCGACGGTCACACTTCTCATATATCACTCCCTCTGACAGTTTTTTGCAAAGAAAAGGGAATAATCCTAATAGCATTATTACCTAATGCAACGCATGTTCTTCAACCCTTAGACGTTTCTGTATTCAGACCCGTGAAAGGAACTTGGAGAACCGTTGTTCATGATTTTAGAGTTCAAAACAACTTTGCAAAATTAAGACGAATAGATTTTGCACCTCAAGTGGATATTTGCTTAAAAAAGACTCTTGTATCACAAACAATTAAGAATGGATTCCAATGTTGTGGATTATATCCCTTTGGACctgataatgtaaattatgataaacttTTGACAAAAAACGCTAATGCAACAAGTGAAGAAAGTGGAGACAATGCAGATGATATTAGTAGCCATGGATCGAGTACTGTTACAGGCAATGAGAAATCTGTCGACGATacagaaaaatttaaacagcAGTTTGAACGTCGCTTATCACCTGAAGTTCTCCTAATGTTCCAAAAATCGGGATCGGTATGGAATGGCGATGAgacttacaaaaaattatttgagttTTGGAGGGATATTAATCCTATCGACAATACACCTTTACAACAAACTTTCGATAACAATTTAGAATTGGGTGATACCACGCTTGTCAACAATATTGGTGAAGAAGAGACGTTGACTTATGAAGTCAGTGCAAGTGGATGTCTTGTTCCAAACCGTTTTAATACCGTTTTAATGTTTCCCATGGACGAATTGCTATCTCCAATTATATCTAAAGAATCGGATACCATATCTTTATTGAGCACTCAGCCTGAATCGAATCTTTTGGAATATGTTAATGAGATACCCCCCAAAACAATTACTACTTCAACTGATTGCGTCAAAGAGTTAAACAGTGAAGATCACAATGCAAGAACATCAACTCCTAAACAATCCAATAAAAACTTTAGTGATGAACCTATGCTACTACTGAATAAAAGTCATAGTGACGACACATTGTTCACTACAGTTAATAATGAAACGCCATGTAAGTCAATCCAAAATTCTAGTCATTCAAGGTTTATACCAAAAGAGCTCAATCTTACAACTCCTTTTAAAAATGCTCTATTCTTTCCTAAAGTTGAcactaaatcaaataaaagagtttccaaaaaaattacaccaaCTGTTGCAATATCAGATGAGTTCATGGAATACCAGAAAAAAGCAGAAGAGAAAAAAGCACaggaagaagaaaagaaaaaaatacggaaagaaaaattacaaagaaataaaatagaaagagAAAAGAAACAAGCAGATCTTAGGAAGGCaaaagaaaggaaaaatatgGGAGCTGTGTCTAAACCAACAAGTGTGAGAAAACATAATACATCAAAAGCGTTGGAAATACGTCGTAATACGACGTCAAGTTCAGAATCTGAATCTGACTCAGTATTAATCCCAcgacaaaataattacaaagtgaaaactaaaaatgcaATACATTCAGGTTATGCTTCAACATCAGCTAGAGTTCTTCCAAATACATCATCATCTGATAATGATGAGTTACATGTACCAAAAACTGTTTCGTATAAAcgacatattatttttccatcTGACTCTGAatctgataatattttttaa
Protein Sequence
MEPQKRKQYASAQLEAALLAINEGTSIYEASKTYGIPRTTLRDKRNNKYINEHCGKQTVLTKEEEKRLVDWIFYLGKSGFPVTKDQLLETVAKLVENLNRSNPFKDGVPGKGWFLKFMARHPTISRRITQNLPTSRSHITEEAVRAWFNRVHSYFEQNNLLDVLEDPSRIFNCDETGFFLCPKGKQVLVRRGSKKVYSRVANDEKECLTVLVNVSADAAIAPPMVLYPYKRLPKNIVPTVPSGWGIGHTESGWMNMAAFYEYVANCFYPWLIQHNIQFPVALFLDGHTSHISLPLTVFCKEKGIILIALLPNATHVLQPLDVSVFRPVKGTWRTVVHDFRVQNNFAKLRRIDFAPQVDICLKKTLVSQTIKNGFQCCGLYPFGPDNVNYDKLLTKNANATSEESGDNADDISSHGSSTVTGNEKSVDDTEKFKQQFERRLSPEVLLMFQKSGSVWNGDETYKKLFEFWRDINPIDNTPLQQTFDNNLELGDTTLVNNIGEEETLTYEVSASGCLVPNRFNTVLMFPMDELLSPIISKESDTISLLSTQPESNLLEYVNEIPPKTITTSTDCVKELNSEDHNARTSTPKQSNKNFSDEPMLLLNKSHSDDTLFTTVNNETPCKSIQNSSHSRFIPKELNLTTPFKNALFFPKVDTKSNKRVSKKITPTVAISDEFMEYQKKAEEKKAQEEEKKKIRKEKLQRNKIEREKKQADLRKAKERKNMGAVSKPTSVRKHNTSKALEIRRNTTSSSESESDSVLIPRQNNYKVKTKNAIHSGYASTSARVLPNTSSSDNDELHVPKTVSYKRHIIFPSDSESDNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00667348;
90% Identity
iTF_00951744;
80% Identity
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