Lmon008616.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905163515.1
- Location
- LR991086.1:3607890-3636516[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.21 8.6e+03 -3.1 0.3 63 279 77 102 47 105 0.40 2 3 4.4e-77 1.8e-72 245.4 24.1 1 283 144 424 144 439 0.87 3 3 0.6 2.5e+04 -4.6 14.6 1 48 437 483 437 502 0.71
Sequence Information
- Coding Sequence
- ATGGGGCATCAATCCGAAGTGGCCACACCTCGAAGTAGCGACGACGAAAGTGGGGATGCTTTTACAGATGGTGATTTCGGCGATTCCGACGAGGAAACTATAATTGAAACAAGTGATGATACAAAATTGTCACAAATACCTGTAACCGAAGCAAAAAACGAGGAGATGCAGAAAATGAACGGCGGAACTAACGGCCATTCTAATGATTTGGAGGAGGCATCTAGATTCAATGGTGCGAAGATTAGTGACAGTCATTCAAGTGACACAGAGAATCAAAGTCTAATATTGTCGGATTTACGTAGAGACTCTCACGGCGAGCAAAACCCATCAATAGTTTGCATACTTGGCGGACAACAGAACCATGTACGTATATTGTATTGTGTCTTGCTAAATCTAAAGATTTTACACGGTCCCAAAAAAGGCTCACAGGCAGAGCAGCGATTAGCTGCTCGTAGAGCTGCTAGAGCAGAAGCTAGAGAGATACGCATGAGAGAATTGGAAAGACAGCAACGGGAGCAGGAGGACCATGCTGACAAGGCGTATGATATGTATTCAGAGACGGTGGGTCGGCGTGATCGAACGCGGTTGGCGGCCCTGAGCCCTGCTGGCTCAGTACACTCGCCGCGCCGCAGTTCCGAGGACTCCGTCGACGATGTGTTCAGCGTCAAAGATCTTAGGCACGAGTTGAAGGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATACTGAATGCGCAGCTCGATAACGATAAAGCGGCGCTCGGTTATCAGCTGGAATTGCTAAAGGATAGGATAGAAGAACTTCACGAGGAGTATGCCCAGCTACAGCGTGAACACAAAGAGAAATGCTCTTCGTTAGAGAGATTGAAGCGCGAACATGAGTCGGTGAGACGCGAGCTGGATGCGGCGCGGGATGCTGTGCGGGCCCGGGACTGTGCCGCCGCAGCGGCGGGCTTCGCCTTCGTTGAGGCAGCCGCGCTCGCCAACAGTACAGATGAGGACGGGGCTGCTCCGCTGGCCGGAATTGGGCCCGCTGTGGGTAGCGTGCCACCGCTGGCGCTCGTTTCGCATCACGCCGAACAACTGCTCAACGACGCTGGAGAGGGCACGCTGGACGTGCGATTGCAAAATCTGTTAAGTTCCAAACAATCACTGGAGTCTGAAGTTAGAAAGTTGAAGCTACAGTTGAACGAGGAGCGCGCCGCGAGACAAAATGGCGTCGCTAATCATCACGATCAGGAATATGAGAATGAACTGGAGGCGGCTCGTAAGAGTGCCATGGAGGCGAAGGGGAGAGCGGCGCGAGCGGAGGCAGAGGCGGCGTTGAACGCGGCGCACGTGGCACGCCTCGAGGCGCAGCTCGCGCGGCTGAAGGCGCGTCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGACGCAAGCTACAACGAGAGGCAAGGGAAGCGTTAAACCGAGTGGAAGAACTAGAAACAGAAAACAGCCATCTAACAAAACGCCTAGATAAACTCAAGAACGCTAAGTCTGCACTACTAAAGGACCTGTGA
- Protein Sequence
- MGHQSEVATPRSSDDESGDAFTDGDFGDSDEETIIETSDDTKLSQIPVTEAKNEEMQKMNGGTNGHSNDLEEASRFNGAKISDSHSSDTENQSLILSDLRRDSHGEQNPSIVCILGGQQNHVRILYCVLLNLKILHGPKKGSQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSETVGRRDRTRLAALSPAGSVHSPRRSSEDSVDDVFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSLERLKREHESVRRELDAARDAVRARDCAAAAAGFAFVEAAALANSTDEDGAAPLAGIGPAVGSVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELEAARKSAMEAKGRAARAEAEAALNAAHVARLEAQLARLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709258;
- 90% Identity
- iTF_00931427;
- 80% Identity
- -