Ldis008090.1
Basic Information
- Insect
- Lymantria dispar
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_032191425.1
- Location
- CM063444.1:35067873-35095973[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 5.7e+03 -2.3 0.7 50 90 64 101 48 105 0.49 2 3 1.5e-76 7.4e-72 243.6 26.6 2 293 143 432 142 438 0.87 3 3 0.64 3.1e+04 -4.7 15.1 1 49 435 482 435 508 0.66
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCTGAAGTGGCCACACCTCGAAGTAGCGACGACGAAAGCGGGGATGCTTTTACAGATGGTGACTTTGGTGATTCCGACGAGGAAACTATAATTGAAACGTGTGATAATACAAAATTGTCACAAATTCCTATAACTGAAGCAAAAAACGAGGAGGTGCAAAAAATGAACGGAGCAACAAACGGCCATTCTAATCATACGGAGGAAGAAACCAAACTCAATGGTACGAAGATTAGTGAGGGTCATTCAAGTGATACAGAGAATCAAAGTCTAGTACTATCGGATTTACGTAGAGACTCTCACGGCGACCAAAGCCCATCAATAGTCTGCATTCTTGGCGGTCAACAAAACCATGTACGTATATTGTATTGCCTTGCTAAATCTAAAGATTTTGCTCGGTCCCCAAAACGGCTCACAGAGCAGCGATTGGCTGCTCGTAGAGCGGCTAGGGCAGAAGCTAGAGAAATACGTATGAGAGAATTGGAGCGGCAGCAACGGGAGCAGGAGGACCATGCTGACAAGGCGTATGATATGTATTCAGAGACGGTGGGTCGGCGCGATCGGACACGGTTAGCGGCCCTGAGCCCAGCAGGCTCAGTACATTCGCCGCGACGCAGTTCGGAGGATTCCGCAGACGATGTCTTCAGCGTCAAGGATCTTAGGCACGAGTTAAAGGAAGTGGAGGAGAAGTTTCGCAAGGCGATGATCCTGAATGCACAGCTCGATAATGACAAAGCGGCGCTTGGATATCAACTAGAACTGCTGAAGGACAGGATAGAGGAACTTCACGAGGAATATGCCCAGTTACAGCGTGAACATAAAGAGAAATGCTCCACATTAGAACGATTGAAGCGCGAACATGAGTCGGTGAAGCGTGAACTGGACGCGGCGCGGGACGCCGTGCGAGCCCGGGACTACGCCGCCGCCGCGGCGGGCTTCGCCTTTGTAGAGGCAGCCGCACTCGCGAACAGCAACGAGGACGAGGGTGCTGCACCGCTAGCTGGCATCGGTCAAGCTGTGGGCAGCGTTCCACCGCTTGCGCTCGTTTCGCATCACGCGGAACAACTGCTCAACGATGCTGGAGAAGGCACGCTAGACGTGCGATTGCAAAATCTGTTAAGTTCTAAGCAATCATTGGAGTCTGAAGTTAGAAAGTTGAAGCTACAATTGAACGAGGAGCGCGCAGCGAGACAGAATGGCGTCGCTAATCATCACGATCAGGAATATGAGAATGAATTGGAGGCGGCTCGTAAGAGCGCGATGGAGGCAAAGGGAAGAGCTGCGCGTGCTGAGGCCGAGGCAGCGCTGAATGCGGCGCACGTGGCGCGCCTTGAGGCACAGCTCGCACGGCTCAAGGCCCGCCAGGATCACCAGGACGAGCACGAGGAACAGCTCAAGCAAGAGCGGCGCAAACTACAACGAGAGGCAAGGGAAGCGTTAAACCGAGTGGAAGAACTAGAAACAGAAAACAGCCATCTAACAAAACGCCTAGACAAACTCAAGAACGCCAAGTCTGCACTACTAAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPRSSDDESGDAFTDGDFGDSDEETIIETCDNTKLSQIPITEAKNEEVQKMNGATNGHSNHTEEETKLNGTKISEGHSSDTENQSLVLSDLRRDSHGDQSPSIVCILGGQQNHVRILYCLAKSKDFARSPKRLTEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSETVGRRDRTRLAALSPAGSVHSPRRSSEDSADDVFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSTLERLKREHESVKRELDAARDAVRARDYAAAAAGFAFVEAAALANSNEDEGAAPLAGIGQAVGSVPPLALVSHHAEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYENELEAARKSAMEAKGRAARAEAEAALNAAHVARLEAQLARLKARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00709258;
- 90% Identity
- iTF_00932571;
- 80% Identity
- -