Llin019182.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- MBD3
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000009.1:4480721-4494124[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-21 6.2e-18 65.0 0.0 5 72 7 69 3 73 0.92 2 2 0.0003 1.6 9.2 0.1 28 73 89 145 76 148 0.81
Sequence Information
- Coding Sequence
- ATGTCAGTAGAGAAAAGGAGATTCGAATGCACAGCTCTACCGAAAGGCTGGCAAAGAGAAGAGGTAGTTCGAAAAACCGGTCTCTCAGCTGGAAAAGTTGATGTGTGTTATTACAGTCCGGAAGGCCAGAAATTTGAGAGTAAGCCCCAGCTAGTGCGTGCTATGAGTGATACAGTTGATCTGACAACATTTGATTTCTCGACAGGGAAATGTAATAGCCTCCTTGCTCGTAggcacaaaaaacctcgaactAGTCAATATGATTACAGcCGTGGTGTAAGAAACGATGCTTCTCTGGTCCCCCCTATCAGGCAAACTGCATCTATATTTAAGCAGCCTGTTACGGTTTTTAAGTCTCAGGAAGGAAAAGTAAAAACGGATTTCAAACATGGGCCACAAGAAAAGCCAAAGCAGTTGTTCTGGGAGAAACGCCTGGAAGGTCTCCACGCTAGTGACATCTTGGGTAACGAGCTGAAGGGGTTAGGACTCCCCAAATCCCTGCGTCCAGTTGGCCCACACGTCACAGACGAAACATTGTTGCAATCCGTAGCGACTGCTCTCCACGTACTTGGACAGCCCATCACTGGGCAGACTGGGTTGAAGGACAACCTTGAAAAAAATCCCGGAGTTTTCATCAATACAGACCAGCCTTTGGTTCAGGCCGTGGCTATAAGCGAAGATGACATCAAACGCCAAGAAGAGAGAGTTCTCGCAGCCAGACGGAAGTTGCAGGAAGCGTTGAAAGAACTGGAAGGGTAA
- Protein Sequence
- MSVEKRRFECTALPKGWQREEVVRKTGLSAGKVDVCYYSPEGQKFESKPQLVRAMSDTVDLTTFDFSTGKCNSLLARRHKKPRTSQYDYSRGVRNDASLVPPIRQTASIFKQPVTVFKSQEGKVKTDFKHGPQEKPKQLFWEKRLEGLHASDILGNELKGLGLPKSLRPVGPHVTDETLLQSVATALHVLGQPITGQTGLKDNLEKNPGVFINTDQPLVQAVAISEDDIKRQEERVLAARRKLQEALKELEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00372929; iTF_01500357; iTF_01365451; iTF_00386351; iTF_00145586; iTF_00884053;
- 90% Identity
- iTF_01365451; iTF_00386351; iTF_00145586; iTF_00884053;
- 80% Identity
- -