Ldol036313.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- MBD3
- Assembly
- GCA_954871275.1
- Location
- OX940977.1:53655331-53665435[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-21 4.7e-17 63.5 0.0 5 73 7 70 3 73 0.92 2 2 0.00084 9.7 8.0 0.1 28 73 89 145 77 148 0.80
Sequence Information
- Coding Sequence
- ATGTCAGTTGAAAAAAGGAGATTCGAATGCACAGCTCTGCCGAAAGGTTGGCAAAGGGAAGAAGTAGTTCGAAAAACCGGCCTCTCAGCTGGAAAAGTTGATGTCTGCTACTACAGCCCGGATGGCCAGAAATTTGACAGTAAGCCCCAACTAGTGCGTGCTATGAGTGATACAGTTGATCTGACCACATTTGATTTCTCTACAGGGAAATCTAATAGCCTCCTAGCCCGTAGGCACAAAAAACCTCGAACTAGTCAATATGATTACAGTCGTGGTGTACGAAACGATGCGTCTCTGGTTCCCCCAATTAGACAAACTGCGTCCATATTCAAACAGCCTGTAACCGTCTATAAGTCTCAAGAAGGAAAAGTGAAAACAGATTTCAAACATGGACCCCAAGAGAAGCCCAAACAGTTGTTCTGGGAAAAGCGCCTTGAAGGCCTCCACGCCAGTGACATCTTGGGCAATGAGCTGAAAGGACTCGGCCTCCCCAAGTCCCTGCGGCCAGTCGGCCCACATGTCTCTGACGAAACACTCCTGCAGTCCGTAGCTACTGCATTACACGTACTCGGGCAGCCCATTACTGGGCAGACGGGGTTGAAAGACAACCTAGAGAAAAACCCTGGAGTTTTCATCAACACAGAACAGCCTTTGGTTCAGGCCGTTGCCGTAAGCGAAGACGACATCAAACGCCAAGAAGAGAGAGTCCTGATAGCCAGGCGGAAGTTGCAGGAAGCTTTGAAAGAACTGGAAGGGTAA
- Protein Sequence
- MSVEKRRFECTALPKGWQREEVVRKTGLSAGKVDVCYYSPDGQKFDSKPQLVRAMSDTVDLTTFDFSTGKSNSLLARRHKKPRTSQYDYSRGVRNDASLVPPIRQTASIFKQPVTVYKSQEGKVKTDFKHGPQEKPKQLFWEKRLEGLHASDILGNELKGLGLPKSLRPVGPHVSDETLLQSVATALHVLGQPITGQTGLKDNLEKNPGVFINTEQPLVQAVAVSEDDIKRQEERVLIARRKLQEALKELEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930337;
- 90% Identity
- iTF_00930337;
- 80% Identity
- -