Llin002346.2
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- retn
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000001.1:35880414-35900150[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-20 1.3e-16 61.6 0.0 17 89 21 91 19 91 0.95 2 2 2.9 1e+04 -2.2 0.0 26 38 240 252 194 253 0.63
Sequence Information
- Coding Sequence
- ATGTGCTGCAACCTAGCGTCGGGGTCGTCAATTGTTACTTCAGGAGTAGGGGTAGTGGGAGGTACGCCCATAAACCGACTTCCCATCATGGCTAAGTCAGTTTTGGACCTATACGAACTTTACAATCTGGTCATCCAGCGAGGAGGCCTCGTAGACGTGATCAACAAGAAATTGTGGCAGGAAATCATTAAAGGACTCCACCTGCCTTCATCCATCACATCCGCAGCCTTCACACTTCGAACACAATACATGAAGTACCTTTACCCATACGAATGCGAGAAGCGGCGGCTTAGCACGCCGGGGGAGCTGCAGGCGGCGATCGACGGGAACCGACGGGAGGGGCGGCGCGGGAGCTACGGCACCTACGCGGAGATGATGCAGAGGAGCCCGGGGGCGGCGTTCGGCGGCGGCGGGGGCGGGCCGGCCGGATCTCCGCTCAGCCTCGTGACCGCACGCGCGGCGGCCGCCCTCAATGGATCTCACcaccacaacaacaacaatcacaTACCCCCTCACCAGGCCGCCGCCGCCCTCCTCCCACCTCCTATCACAGGGTCTGCCGGCATGGCTCCAGCGGAATTTGAAGCCAGGATGGTCGAATACGTAAAACTTTTGAACAAAGAACTACGGACTTCGGCGACTACACCGCCAATAAACAACAGACAAGGTTCGCCCCCGGGTTCTCCTCCCGAAGGCACCGCAGCGGGGATCAACCCTCTGGAGATGTCGAGGCTAACGCTTTGGAACCTATACCACACGCCAGAGCCCCAAAAAGAGGCGCTGAACCTGGAGAAAAGGGACGACCCtctccccccaccaccaccgAAAAGGCATTATCCGGATAATAATCAGGATGACACGCCCAACAACGCTATCAGTGGGGCGCACATAAAAATATCCAGCAGAGGAGATGGGCGAGGTGGAAACGAGAATTCCCTTGTAGTTAGTATGGATATTAACGGAATCATGTATCAAGGCGTCCTCTTCGCACAATCTGCGCGCAGTAATAGGCTACAATCATGA
- Protein Sequence
- MCCNLASGSSIVTSGVGVVGGTPINRLPIMAKSVLDLYELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPGELQAAIDGNRREGRRGSYGTYAEMMQRSPGAAFGGGGGGPAGSPLSLVTARAAAALNGSHHHNNNNHIPPHQAAAALLPPPITGSAGMAPAEFEARMVEYVKLLNKELRTSATTPPINNRQGSPPGSPPEGTAAGINPLEMSRLTLWNLYHTPEPQKEALNLEKRDDPLPPPPPKRHYPDNNQDDTPNNAISGAHIKISSRGDGRGGNENSLVVSMDINGIMYQGVLFAQSARSNRLQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145334;
- 90% Identity
- iTF_00145334; iTF_01365190; iTF_00386080;
- 80% Identity
- -