Scal026890.2
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- retn
- Assembly
- GCA_963920205.1
- Location
- OY986057.1:9719906-9735381[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-20 1.4e-16 61.9 0.0 15 89 22 94 12 94 0.91 2 2 3.3 1.5e+04 -2.3 0.0 26 38 244 256 198 257 0.63
Sequence Information
- Coding Sequence
- ATGGTAAGTACATCAGATGGGGAGATGGGGTACATCCTGGGTGAATTGCTAACCAGAATGCCTGTGGAAAGTACGCCCATTAACCGACTTCCCATCATGGCAAAGTCTGTTTTGGACCTCTACGAGCTGTACAATTTGGTCATCCAGCGCGGAGGCCTAGTAGACGTAATCAACAAGAAACTGTGGCAAGAAATCATCAAAGGGCTTCACCTGCCTTCATCCATTACGTCAGCAGCCTTCACCCTCCGGACACAATACATGAAGTACTTGTATCCATACGAATGCGAGAAGAGGCGTCTGAGCACGCCAGGGGAGCTCCAGGCAGCGATCGACGGAAACCGGCGGGAGGGGCGACGCGGAAGCTACGGAACCTACGCGGAGATGATGCAGAGAAGCCCGGGGGCGGCGTTCGGCGGTGGTGGGGGCGGTCCGGTCGGTTCTCCTCTCAGCCTTGTTACCGCACGCGCGGCAGCCGCCCTTAATGGATCTCATcaccacaacaacaacaaccacATACCCCCGCACCAGGCAGCTGCCGCTGCTCTCCTGCCTCCTCCAATCACTGGGTCTGCTGGTATGGCTCCAGCTGAATTCGAAGCTAGAATGGTTGAATACGTCAAGCTTTTGAATAAAGAATTGGGAACTTCAGCGACTACTCCACCAATAAACAACAGACAAGGTTCACCACCGGGTTCTCCACCGGAAGGCACTGCAGCCGGGATAAATCCTCTGGAGATGTCGAGGCTAACGCTTTGGAACCTCTACCACACGCCTGAACCCCAAAAAGAGGCGCTCAACCTGGAGAAAAGGGATGatcccctcccaccaccaccgCCCAAAAGGCACTATCCAGATAATAATCAGGATGACACATCTAACAACACAGTCAGTGGGACGCATATTAAAATATCCAGTAGAGgagatGGCCGCGGTGGAAATGAAAATTCTCTAGTAGTTAGTATGGATATAAACGGGACGATGTACCAAGGTGTCCTATTTGCACAATCTGCGCGCAGTAATCGGCTACAATCATGA
- Protein Sequence
- MVSTSDGEMGYILGELLTRMPVESTPINRLPIMAKSVLDLYELYNLVIQRGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPGELQAAIDGNRREGRRGSYGTYAEMMQRSPGAAFGGGGGGPVGSPLSLVTARAAAALNGSHHHNNNNHIPPHQAAAAALLPPPITGSAGMAPAEFEARMVEYVKLLNKELGTSATTPPINNRQGSPPGSPPEGTAAGINPLEMSRLTLWNLYHTPEPQKEALNLEKRDDPLPPPPPKRHYPDNNQDDTSNNTVSGTHIKISSRGDGRGGNENSLVVSMDINGTMYQGVLFAQSARSNRLQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145334;
- 90% Identity
- iTF_00930103;
- 80% Identity
- -