Lphl004953.1
Basic Information
- Insect
- Lycaena phlaeas
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905333005.1
- Location
- HG995172.1:16609327-16621507[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-76 9e-72 242.4 20.9 1 270 107 383 107 400 0.90 2 2 1 2.6e+04 -7.4 15.3 1 44 401 444 401 475 0.65
Sequence Information
- Coding Sequence
- ATGGGCAATCGTTCCGAGCTCGCCACACCCGACAACAGCGACGAGGAGACCGGGGACGCCTTCACTGATGGGGACTTTGGTGATTCCGATGACGAAACGATCATCGAGCGCAGTCCTGAACCAAAATCATCAATACCCGTCAATGAAACCATCAACGGATTCGTGGAAGCCGTCGAGGAGGTACAACTTGTGAATGGACACTCTTCTGATAAAGTCATTGATGAATCATTTGCACGGATCGAGGATGTTGACGGACGCAGGGACTCGCACAGCTCCACCAGCTCTATAGTTGGAATACTCGGGGATCAACAGAATCACGCTGAGCAGAGACTGGCGGCGAGGCGGGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAACAAGAGGACCATGCCGACAAGGCCTACGACATGTATGCGGAGACGGTGGGTAGACGTGCCGGCGGTCGGCTGGCGGCCTTGAGTCCCGCCGCCCTGCACTCGCCGCGCCGCAGCTCAGAGGACTCGGACGATGTGCTCAGTGTTAAGGACCTTAGGCACGAACTGAAGGAAGTGGAGGAGAAGTTCCGGAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAAGCGGCGCTTGGCTACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTTCAGGAGGAGTTTGCACAGCTACAGAGGGAGCACCGGGAGAAATGCTCTAGTCACGAGCGGCTGAAGCGCGAGCACGCTACGCTCGAGCGCGAGGTGACGCTGGCGCGGGACGCCGTGCGCGCGCGAGACTCGGCCGCCGCCGCCGCGGGCTTCGCCTTCGTGGACGCCGCCTCGGTGGGCGGGGACGACGGGGAGGGACGGGGGGACGTGATCGCGGGGGCGGGGGTGGCGGGCGAAGCGCACGGCAGCGTGCCGCCGCTCGCGCTTGTGTCGCACCAATCGGAGCGGCTGCTTAACGACGCGGGGGAGGGATCGCTAGATGTACGGTTGCAAAACCTGGTGAGCTCGAAGCAGGCGCTGGAGGGCGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCCGCGCGGCAGAACGGCGTCGCCTCCCACCACGACCGGGACCACGAGACCGAGCTGGAGAGCCTGCGCAAGGCGGTGGCGGAGGCCAAGGGGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGCCTCGAGGCGCAGGTGGGCCGGCTGCGCGCGCGCCACGACCAGCAGGACGAGCACGAGGAGCTGCTGAAGCAGGAGCGGCGCCGGCTGCAGAGGGAGGCAAGGGAGGCCCTCAACAGAGTGGAAGAACTGGAGACAGAGAACAGCCACCTAACAAAGCGGCTGGACAAGTTGAAGAATGCCAAGTCAGCGCTTCTCAAAGATCTGTGA
- Protein Sequence
- MGNRSELATPDNSDEETGDAFTDGDFGDSDDETIIERSPEPKSSIPVNETINGFVEAVEEVQLVNGHSSDKVIDESFARIEDVDGRRDSHSSTSSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPAALHSPRRSSEDSDDVLSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEFAQLQREHREKCSSHERLKREHATLEREVTLARDAVRARDSAAAAAGFAFVDAASVGGDDGEGRGDVIAGAGVAGEAHGSVPPLALVSHQSERLLNDAGEGSLDVRLQNLVSSKQALEGEVRKLKLQLNDERAARQNGVASHHDRDHETELESLRKAVAEAKGRAARAEAEAALQAAAVARLEAQVGRLRARHDQQDEHEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00687891;
- 90% Identity
- iTF_00786809;
- 80% Identity
- -