Lchi019384.1
Basic Information
- Insect
- Luehdorfia chinensis
- Gene Symbol
- PAXBP1
- Assembly
- GCA_029286615.1
- Location
- JAGSMQ010000245.1:708390-730570[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-17 1.2e-12 48.8 0.0 8 190 516 677 509 689 0.79
Sequence Information
- Coding Sequence
- ATGTCATTGTTTCGGAAACCAAAGAAAATTCAAAGACGCGTTTTTTGCGCGGATGATGACGAAGACGGTGAACCGGAACCACCGCCGCCTCCAATCATCAGccagaaaaaagaaaacaaaccgACAAAAAATACTACTCTTTTGAGTTTTGCTGATGAAGagGATGATGGGGAAGTTTTCAAAGTAAAGAAGTCATCGCAAAGTAAGCGACTTGCCAAGAGACGGGAGAAGGAGAAACGACGTGTCCCAGAGGGTGATAATATAAAATTCGACAATAACATACCTGAGgaatCGCCAGATATAGAAGAAATAGAAGAAAAGCCGAAGTCAAAGAAGAAAGTAACACTCGAAGGGCTGATATTGTCTGGCCGTGAGGCTTTAGCCGCTGATGGGGCCGGTGATATCTCAGATGACGATGTGGAAGAAGAAGACGAGGATAGTAGGGGGTTCCATCGATATCGTGCGGAATCCGTACGCGCGGCGCTAGCGCAACCGGGACACATTCCCGACGCGGCGCTCATCCATGCGGCGCGCAAGACTCGACAGCAGGCGCGCGAGCTAGGAGACTTCGTTCCGGTACCATCTGAAACTGCTCCTGGGTCGCGGCTCATACGCGATGATGGATCaggtgatgatgaagatgaagacgGCAGGATAATAGTCCGTGGTCTGGAATTACCCAGTGATAAGCCAAAACGTGGCACAACAGCAGCGGCGTCCGAAGAAGAGTTGGACAGTGAAACAGAAGGATGGGAAGAGCAACAAATGCAGAAAGCAATGCCTGCTATAATAGACATTACAGgtGAAGGCAGCGTGGAGCTGAATCCGTTCGCAGTCGCCCCGCCTCAGCCATGCTTGACGGAGGCGCCTTCATACTTACGCTCGTTGGTAGCGGCTGGTATGGCTCCGCCCTCCACCGCTCAAGAATTGCTTGATGCGCTTAAAACGCGGTCCAGGGAGCTGAGCGAGGAGCGCGCCAGCACGGCCCGCAAGAAGGAGGAGTGCCGCGACCGGTTGCTGACCGCGGCCCGCATCCGCGAGTCGCGCGCCGCGCGCTGCGCCCAGCTCGACGCCGCCTACCGGCGCGCGCAGGCCGCCCGCGGGTACATCACCGACCTCATCGAGTGCCTCGACGAGAAGatgcCACAATTAGAAGCTTTAGAAGCGAGAGCATTAGCGATGCACAGACGGCGTTGCGAGTTCCTTGTAGAGAGGCGTCGAGCCGATGTTCGCGATCAGGCACAGGATGTGTTGGCACTATCTGCACGCCCAGGCGCAGCGAAACCTGTAGAAAGCGAAGAGAAAACTCGTCGCGCGGCCGAGCGTGAGGGACGCAGGCGCGCGCGCCGCATGCGCAGGGAGGCCGCCGCGGCCGCCGCCGGCGCGCCGCCCGCACACCGCGACGGGGACTCCAGCGACGACGACCTGCCGCCCTCCGAGCGACAGCACTACGAGCACGAGGCCGAGGCGATAAGGAGCATGTCGGCGCAGCTGTTCGCGGACGCGCTGCCGGCGTGGCGCGGCGTGCGCGGCGTGTGCGGGCGCGTGGCGCGCTGGCGCCGCCGCGACGCCGCGCTCTACAGCGACGCGTACGTCGCCGACTGCCTGCCGCGGCTGCTGGCGCCCTACGTGCGGCACGAGTTGATTATGTGGAATCCTTTGGCTGATGAAGATAATGAAGATTACGAAAAAATGGACTGGTACAAATGCCTTATGATGTACGGAGTCCGATCGGAAAAACTGTCGAGCGATTCAGACCTGTCGTCCGATGACGAAGCTGGTAAGGCGCCGGCAGTGAGCGAAGACACTGTCAGAGAAGACCCGGATTTGTTCCTCGTGCCAACTATTGTGAACAAGGTTGTGTTGCCAAAAGTCACAGAGCTAGTGGAGCATGCGTGGGATCCAGTGTGCGTGCGGGCATGCGTGCGGCTGCGACGTGTGCTGGAGCGCGGCGCCGCACTGCCGGGCAGCGCAGCGCTGCGCCGCCTCGCCACCGCAGCGCGCGCCCGCCTCGCCGCCGCGCTGCAGGCCGATGTGTTCCTGCCCGCTCTGCCTCCGCAGGTATTGGAGGGAGCCGGTGGTGCGTTTTGGCGACGCTGCCTGGGCGCCGGAGTGAGGTTGCTGCGGGCAGCACTTTCTTTGTCTGCCCCTCCGCCCACTCTGAATGCCGACAGTGTAGTGTTGTCGCTTATTGaGACGCTATGCTGCGCGGCGGGCGCAGCTCCCGGGCCGCAgatggcggcggcggcggccgcCCTGGCGCACACCTTGCCTCGCTCCGGCCCGCTGCGCTCCGCAGCACTGCAGCGCCTGGCGCGGCTCGCGCAGCTCGCGCTCAGCCGCCTGCACACCGACAATCCGCTGCACCTGAAAGCACTGGAACAAGCACGTGGAGTACTGTCGGAAGCCAGAGCTGCGGAATGA
- Protein Sequence
- MSLFRKPKKIQRRVFCADDDEDGEPEPPPPPIISQKKENKPTKNTTLLSFADEEDDGEVFKVKKSSQSKRLAKRREKEKRRVPEGDNIKFDNNIPEESPDIEEIEEKPKSKKKVTLEGLILSGREALAADGAGDISDDDVEEEDEDSRGFHRYRAESVRAALAQPGHIPDAALIHAARKTRQQARELGDFVPVPSETAPGSRLIRDDGSGDDEDEDGRIIVRGLELPSDKPKRGTTAAASEEELDSETEGWEEQQMQKAMPAIIDITGEGSVELNPFAVAPPQPCLTEAPSYLRSLVAAGMAPPSTAQELLDALKTRSRELSEERASTARKKEECRDRLLTAARIRESRAARCAQLDAAYRRAQAARGYITDLIECLDEKMPQLEALEARALAMHRRRCEFLVERRRADVRDQAQDVLALSARPGAAKPVESEEKTRRAAEREGRRRARRMRREAAAAAAGAPPAHRDGDSSDDDLPPSERQHYEHEAEAIRSMSAQLFADALPAWRGVRGVCGRVARWRRRDAALYSDAYVADCLPRLLAPYVRHELIMWNPLADEDNEDYEKMDWYKCLMMYGVRSEKLSSDSDLSSDDEAGKAPAVSEDTVREDPDLFLVPTIVNKVVLPKVTELVEHAWDPVCVRACVRLRRVLERGAALPGSAALRRLATAARARLAAALQADVFLPALPPQVLEGAGGAFWRRCLGAGVRLLRAALSLSAPPPTLNADSVVLSLIETLCCAAGAAPGPQMAAAAAALAHTLPRSGPLRSAALQRLARLAQLALSRLHTDNPLHLKALEQARGVLSEARAAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00204367; iTF_01147393; iTF_01148825; iTF_01145275; iTF_01140933; iTF_01144549; iTF_01148104; iTF_01149612; iTF_00195181; iTF_01494322; iTF_01115715; iTF_00957965; iTF_01495789; iTF_01495059; iTF_00180505; iTF_00197378; iTF_01402732; iTF_00249717; iTF_00840310; iTF_01141688;
- 90% Identity
- -
- 80% Identity
- -