Tobl001648.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Troides oblongomaculatus
Gene Symbol
PAXBP1
Assembly
GCA_029032895.1
Location
JARDWC010000086.1:2433362-2445376[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-17 1.6e-13 51.4 0.0 7 190 515 677 509 690 0.85

Sequence Information

Coding Sequence
ATGTCATTGTTTCGTAAACCAAAGAAGATTCAAAGACGCGTTTTTtgtgctgatgatgacgatgacggcGACCCAGAGCCGCCACCGCCTCCAATCATCAGTCAGAAGAAAGAAAACAAACCTATTAAGAATACTCCTCTGTTGAGTTTTGCTGATGAAGAGGATGATGGTGaagtttttaaagtaaagaAGTCGTCACAAAGCAAGCGACTCGCCAAGAGACGGGAGAAGGAAAGGCGCCGCGTCCCTGATGGTGATAATAACAAATTTGAGAATGACACACCAGAGgAACCAGTGCAGCCAGAAGATAATGACGAAAAGCCAAAGTCTAAGAAGAAAATCACGCTCGAAGGTCTAATTCTAGCCGGCCGCGAGGCATTGGCCGCCGACGGCACCGGTGACGTGTCTGACGATGAAGTAGGAGAAGAAGACGAGGATAGTAGGGGGTTCCATCGGTACCGCGCGGAGTCAGTGCGCGCGGCACTAGCGCAGCCGGGTCACATTCCCGATGCGGCACTCATCCACGCGGCCCGCAAGACCCGACAGCAGGCACGCGAGCTTGGTCCATATGTCCCGATACAGTCGGAGCCAATGCCGGGCTCGCGGCTCATCCGTGACGATGGATCCGGCGATGATGACGACGAGGATGGCAGAATAGAAGTCCGCGGATTGGTGTTGCCTAATGATAAACCTAAACGTGGTACTACCGCCGCTGCTTCTGAGGAGGAGATCGACAGCGAAGCGGAAGAATGGGAAGAACAACAAATGCAAAAGGCTATGCCTGCCATTGTAGATATTACTGgTGATGGAAACTTAGAACTGAATCCGTTCGCAGTGGCCCCGTCGCAGCCCCGCCTTGAAGCGACACTTTCTCACTTACGCTCATTGATAGCGCCCGGTAAGCCTCCGCCCGCCTCAGCGCAGGAGCTACTCGAAGCGCTTAGAACACGTTTGGAGGAGCTCCGAACGGATCGCTCCGCGATGGAGACGAAGCGTAACGAATGCCGCGACCGGCTGTTGAACGCGGCGCGCAGGCACGAGTCGCGCGCGGCTCGCCGCGGCCGGCTGGATGGCGCATACCGGCGTGCGCAGGCGGCGCGCGGTTACCTCACCGACCTCGTCGAGTGTCTCGATGAGAAGatGCCGCAGTTGGAAGCGCTGGAGGCACGCGCTCTGGCGATGCATCGTCGTCGCTGTGAATTTCTAATGGAGCGGCGGCGAGCCGATGTACGTGACCAGGCGCAGGACGTTCTAGCTCTGGCAGCTCGGCCCGGCACGGCGAAAGTAGTAGATAGCGAGGATAAAACGCGTCGCGCGGCGGAAAGGGAGGGGCGGAGGCGCGCGCGCCGTTTGCGACGCGAGGCCGCAGCGGCAGCTACGGGAACGCAGTGTGTGCACCGCGACGGAGATTCCAGCGATGACGATCTGCCACCTGCCGAGAGGCAACACTTCGCTCACGAGGCAGatGCGATACGGCAGTTGTCTGGGCAACTGTTCGCGGACGCGCTGCCAGCGTGGCGCGGCGTGCGCGGTGTATGCGCCCGCACAGCTCGCTGGCGGCGCCGTGACCCAGCACTCTACAATGACGCGTACGTCGCAGACTGCCTACCGCGCCTGCTCGCGCCATACGTTCGTCACGAGCTGATACTCTGGAATCCACTAGCAGACGAAGATAACGAGGATTACGAGAAAATGGACTGGTACAAATGCCTCATGATGTATGGAGTTCGTCCGGAGAAGCTGTCGAGTGATTCCGAGGAATCTTCCGATGAGGATGATCAGGTGTCAACCACTGTGCACGAGGAGACGGTGAGAGAAGACCCGGACCTGTTTCTCGTGCCTACGATTGTGAACAAGGTTGTGTTGCCCAAGATAACAGAGCTGGTGGAGCATGCGTGGGATCcggtgtgcgtgcgcgcgtgcgtgcggCTGCGTCGCTTGCTGGAACGCGCGTGCGAGCTGCCCGGAGGCGACGCGCTGCGCCGTCTCGCGGCTGCTGCGCGCGCGCGTCTCGTCACAGCGCTGCACGCCGACGTGTTCCTTCCGGCGCTGCCGCCGCCGATTTTGGAAGGTGCCGGTGGTGCGTTCTGGCGGCGCTGCCTCGGCTCCGGGGTGCGGCTCCTACGCGCGGCGCTCGCCCTCTCCGCGCCACCGCCCGCCCTCAACGCTGACAGTGTGGTCCTCTCACTTATAGAAACACTGTGTTGCGCGGCGGGCGCAGCGCCTGGACCGCAGGTGGCGGCTGCGGGCGCGGCGCTCGCTCACACGCTGCCTCGTACCGGCGCACTGCGCGCCAAAGCACTACAACGGCTGGCTCGGCTGGCCCAGCTCGCGCTCTCCCGCTTGCAGACCGACAATCCTCTACACTTgAAAGCACTGGAGCAGGCGCGCGGGATCATCGCGGAAGCGCGAGCCCTCGAAGGGTAA
Protein Sequence
MSLFRKPKKIQRRVFCADDDDDGDPEPPPPPIISQKKENKPIKNTPLLSFADEEDDGEVFKVKKSSQSKRLAKRREKERRRVPDGDNNKFENDTPEEPVQPEDNDEKPKSKKKITLEGLILAGREALAADGTGDVSDDEVGEEDEDSRGFHRYRAESVRAALAQPGHIPDAALIHAARKTRQQARELGPYVPIQSEPMPGSRLIRDDGSGDDDDEDGRIEVRGLVLPNDKPKRGTTAAASEEEIDSEAEEWEEQQMQKAMPAIVDITGDGNLELNPFAVAPSQPRLEATLSHLRSLIAPGKPPPASAQELLEALRTRLEELRTDRSAMETKRNECRDRLLNAARRHESRAARRGRLDGAYRRAQAARGYLTDLVECLDEKMPQLEALEARALAMHRRRCEFLMERRRADVRDQAQDVLALAARPGTAKVVDSEDKTRRAAEREGRRRARRLRREAAAAATGTQCVHRDGDSSDDDLPPAERQHFAHEADAIRQLSGQLFADALPAWRGVRGVCARTARWRRRDPALYNDAYVADCLPRLLAPYVRHELILWNPLADEDNEDYEKMDWYKCLMMYGVRPEKLSSDSEESSDEDDQVSTTVHEETVREDPDLFLVPTIVNKVVLPKITELVEHAWDPVCVRACVRLRRLLERACELPGGDALRRLAAAARARLVTALHADVFLPALPPPILEGAGGAFWRRCLGSGVRLLRAALALSAPPPALNADSVVLSLIETLCCAAGAAPGPQVAAAGAALAHTLPRTGALRAKALQRLARLAQLALSRLQTDNPLHLKALEQARGIIAEARALEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00922890;
90% Identity
iTF_00249717;
80% Identity
iTF_01495059;