Lmag009319.1
Basic Information
- Insect
- Lordiphosa magnipectinata
- Gene Symbol
- -
- Assembly
- GCA_018904285.1
- Location
- JBAMBO010001589.1:68891-77548[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.5e-07 6.3e-05 23.9 3.4 1 23 216 239 216 239 0.97 2 17 0.00038 0.028 15.5 0.5 1 23 246 268 246 268 0.98 3 17 0.4 30 6.0 0.2 2 23 300 321 299 321 0.94 4 17 0.0002 0.015 16.4 0.8 1 23 410 433 410 433 0.97 5 17 0.27 20 6.6 0.2 2 19 441 458 441 461 0.92 6 17 0.039 2.9 9.2 5.2 1 23 470 492 470 492 0.95 7 17 5.5e-06 0.00041 21.3 0.4 1 23 499 522 499 522 0.97 8 17 0.00015 0.011 16.8 1.4 2 23 530 551 529 551 0.96 9 17 0.0069 0.52 11.6 0.1 2 21 578 597 577 598 0.94 10 17 0.0039 0.29 12.3 2.4 1 23 652 675 652 675 0.98 11 17 0.059 4.4 8.6 2.7 1 23 712 735 712 735 0.95 12 17 0.0002 0.015 16.4 1.6 2 23 769 791 768 791 0.95 13 17 0.00064 0.048 14.8 1.4 1 23 805 827 805 827 0.95 14 17 0.00016 0.012 16.7 1.2 1 23 833 855 833 855 0.99 15 17 5.2e-07 3.9e-05 24.5 2.6 1 23 861 883 861 883 0.98 16 17 9.7e-05 0.0072 17.4 2.3 1 23 889 911 889 911 0.96 17 17 5e-05 0.0037 18.3 0.6 1 23 917 941 917 941 0.90
Sequence Information
- Coding Sequence
- ATGAAACTACCAGTCGTTTGTCGCACTTGCGATGCAAATGCCAGGGAAGCGGATAAACTGTTTAATCTGGACACGCCCAGCAAGAAGTACCCAGACAAATCGCTGGCAAGTATTCTAAGCGAACTGACCGACATTGATTTAAATGTATCTTTTGGTCAGAATTTGCCACAATGCCTGTGCGCCAGTTGTTCCAAAAGATTGGTCTCGGCCTTTGAGTATGTGAAACAGGCTTTGGCTGCCCATGATCTTCTAATGAAACATGTCAAGAAGAAGGTACCCACCAGCGATTGTTTGCTAGAGGCGCCCATGGAACTTTGTGCCGAGCAGCATGTAGAGGTTAAAATGGAAACGGAAGAAGATGCTGAAGACGCAGAGGGAGACAATGACATCACCTGCACAGAGTTACCAGAGTTGCCTGCCGAGGAGTATTTAGACACTAAGAGATCCATAGATCCACTTATAATGCTCGAGGCAGTCAAGCAGGAGGAAACTGCACAGAAATTCGCGGTGGAGGAAGAGTGCGATGAGGAAACTCATGATTTTGAGGCGGACTACGAGGACGATGAAGATTCACTGGATAATCTACCGCTGCAGCGTCGTGTTCAAAAGTGGAAGCAAGCCACCAGTAAGAACCAAAAATCGAATTTCCAGTGCAGCGAATGTCCAAAAAGCTTTAAACGCGCCGAGCATTTAAAACAACATCAATCTCGCACACACAGCGGCACCCGCTCCCTATTCCCTTGTTCGCTCTGCATACGCAAATTTAGTCGTCAGGAGGCACTGCAGTCCCACCTTAAAGTGCATCGGGACTCTAAGCGCTCAACCAATATCAGTGAACACAAGAAAGCCAAAGCGATTGATGTCAATCTGTGCAAGCCCCATGGTTATAAGCTCATCGAGTGCATGATCTGTCAGAGCCAATACAATAAAATTGCCGATCTGCGACGCCATCTTACGGAGCACCCGGAAATTATTACACTGACAGGTCGTCCCAATATGGAGCCGCATGAGATTGCTGAACTATTTTATCCCGATGCCAAGAATGCTAGCGAAGAGCAATTAAAGCAATTAATACGCAAAGATTTGTCCAGTGGCAACTATCAGCGATTTTATTCGATAACCAATCAGTCCGGATATGAGATGGATCTGGACAGCTCGGAGACGGAGAGCGAGCCAGAAGCGGAGGATGAACAGCAATGTGCGACAAGCAAGTCACGTCCTGCCAAATACAATTGTGAGCTGTGTCCGCAGAAATATGCCAGAAAGTATCAACTTTATGATCACCAGCGTCAAGCACATCCCTGGCTAGAGGCTCCTAATGTGTGTGGCCGTTGTGATGCCCGATTTGTCAGCCTGCAGCTACTGAGACATCACAATGAGTCGCAGTGTCGGAATGCACAGAAACGTTTTCTTTGCCACAAATGTCCGCTGCGTTTTCGGTGGAAACACAATCTCAGGGCTCATTTTCGGGAGCACCGAATTACCaacCAAATCTACGAGTGTCCGGATTGCAAACGTGTGTTTGATAAAAAGAAATCCCTAACTGTCCATCTGCTGAGCGTACATGCCGAAGAATCTAAGCTGCTGCCGTGCCAATGGTGCAGTCGCAAGTTCTATCGTCGAGACTATTTGGTCAAACATCTGAAGCGTCATGGCTTACGGGAACAGGATATTCCGCTGGCCGAAACCCTTATAGCGGCCACTTCCAAACCTCATGGCATGAAGCGCATTTCCTGTAAGATTTGCAATCTTCAATTCGAGCGCATTAACGACCTGCGTGCTCATATTCAGCTGGAGCTGAAGCTAGCGCTGACATCCGCGTCATCGCTGCATCAGAATTACGAATCTCTGCACAACTATTCTATAACCAATGAATCTGGTTTTGAACTGCAGCTGGGCGATTCAGAGACAGAGGATGAAATGTCGGTAATGGGATCTGGGAACCGTTTGCTATACATTTGTGAACTGTGCAGCGTACAGTGCAGGCGTAAGTACGAAATGATCCAGCATCAGCGGACCATGCATCGCTTTGACAAGATGCCGCATGAGTGTGACAAGTGCATTTTTAAGTGTGTGTCCAAGAGCATCATGGATCATCATCAGCGAGTGCAATGTGGCAGCCTGGAGAAAAAGTATTCGTGCAGTCACTGCAGCTACAAGTTCATGTGGCCTGAGAATCTGGAGCAACACATACACCTGCAGCATGGCCAGCTAATGACAACGAACAGTTTGCAACCGTCAACCAGCGAAGACTCGAAAGCTCCAGTGAAGCCAAATACCTCAGAGGATGTGCCGCCAATGCTTCAGTGCCCTCATTGCGATCGCACTTATCAAATGAAATCCAGACTTAACAATCATATACGAGATGTCCATGTAAATGGCGATCGCAAGCGCAAAGAGGCCGTTAAACTGTTCCTTTGCTCTCTGTGTGGTCGTGAGACAAAATCGGCCGCCTGCCTGGTTACGCATATGCGTCGTCACACGGGCGAAAAACCATTTAAATGCGATCTTTGCGAAATGGCCTTCCCCCGGCACTCGGAAATGATATCTCATCGGCGCATGCATACTGGAGAGAAGCCCTTCCATTGTACAGTCTGTGGCAAAGACTTTGCCCGTTCCGACAAGCTGAAGAGGCACATGTTGACGCACAGCGGTTTGAAACCGCACGCCTGCACCTATTGCGAAAAGAGCTACCGTCAGGCCAAGGATTTGAAGTTGCATCTGCAACAGCACACGGGCGAATGTCCCTTCATCTGTGGCACTTGCGGTGAACGCTTCATTCAGAGCAGCACACTAGAGAAGCATCGCATGATGCGACGCCATTTTGATGAAGTGGAGGTAGCACAGAATTAg
- Protein Sequence
- MKLPVVCRTCDANAREADKLFNLDTPSKKYPDKSLASILSELTDIDLNVSFGQNLPQCLCASCSKRLVSAFEYVKQALAAHDLLMKHVKKKVPTSDCLLEAPMELCAEQHVEVKMETEEDAEDAEGDNDITCTELPELPAEEYLDTKRSIDPLIMLEAVKQEETAQKFAVEEECDEETHDFEADYEDDEDSLDNLPLQRRVQKWKQATSKNQKSNFQCSECPKSFKRAEHLKQHQSRTHSGTRSLFPCSLCIRKFSRQEALQSHLKVHRDSKRSTNISEHKKAKAIDVNLCKPHGYKLIECMICQSQYNKIADLRRHLTEHPEIITLTGRPNMEPHEIAELFYPDAKNASEEQLKQLIRKDLSSGNYQRFYSITNQSGYEMDLDSSETESEPEAEDEQQCATSKSRPAKYNCELCPQKYARKYQLYDHQRQAHPWLEAPNVCGRCDARFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLRAHFREHRITNQIYECPDCKRVFDKKKSLTVHLLSVHAEESKLLPCQWCSRKFYRRDYLVKHLKRHGLREQDIPLAETLIAATSKPHGMKRISCKICNLQFERINDLRAHIQLELKLALTSASSLHQNYESLHNYSITNESGFELQLGDSETEDEMSVMGSGNRLLYICELCSVQCRRKYEMIQHQRTMHRFDKMPHECDKCIFKCVSKSIMDHHQRVQCGSLEKKYSCSHCSYKFMWPENLEQHIHLQHGQLMTTNSLQPSTSEDSKAPVKPNTSEDVPPMLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAVKLFLCSLCGRETKSAACLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHACTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQSSTLEKHRMMRRHFDEVEVAQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00915515; iTF_00919237; iTF_00917384; iTF_00914671; iTF_00916447;
- 90% Identity
- iTF_00914671;
- 80% Identity
- -