Basic Information

Insect: Lordiphosa collinella
Gene Symbol: -
Assembly: GCA_018904265.1
Location: JAEIFV010000259.1:290708-293921[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00042 0.021 15.5 2.5 1 23 218 241 218 241 0.92

2 17 0.00042 0.021 15.5 0.5 1 23 248 270 248 270 0.98

3 17 0.45 22 6.0 0.2 2 23 302 323 301 323 0.94

4 17 0.00083 0.041 14.6 2.0 1 23 412 435 412 435 0.97

5 17 0.11 5.3 7.9 0.5 1 19 442 460 442 463 0.93

6 17 0.044 2.1 9.2 5.2 1 23 472 494 472 494 0.95

7 17 6.2e-06 0.0003 21.3 0.4 1 23 501 524 501 524 0.97

8 17 0.00016 0.008 16.8 1.4 2 23 532 553 531 553 0.96

9 17 0.004 0.2 12.4 0.2 2 21 580 599 579 600 0.94

10 17 0.0044 0.21 12.3 2.4 1 23 655 678 655 678 0.98

11 17 0.066 3.2 8.6 2.7 1 23 715 738 715 738 0.95

12 17 0.00022 0.011 16.4 1.6 2 23 771 793 770 793 0.95

13 17 0.00071 0.035 14.8 1.4 1 23 807 829 807 829 0.95

14 17 0.00018 0.0089 16.7 1.2 1 23 835 857 835 857 0.99

15 17 5.8e-07 2.8e-05 24.5 2.6 1 23 863 885 863 885 0.98

16 17 0.00011 0.0053 17.4 2.3 1 23 891 913 891 913 0.96

17 17 3.9e-05 0.0019 18.8 0.5 1 23 919 943 919 943 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00042	0.021	15.5	2.5	1	23	218	241	218	241	0.92
2	17	0.00042	0.021	15.5	0.5	1	23	248	270	248	270	0.98
3	17	0.45	22	6.0	0.2	2	23	302	323	301	323	0.94
4	17	0.00083	0.041	14.6	2.0	1	23	412	435	412	435	0.97
5	17	0.11	5.3	7.9	0.5	1	19	442	460	442	463	0.93
6	17	0.044	2.1	9.2	5.2	1	23	472	494	472	494	0.95
7	17	6.2e-06	0.0003	21.3	0.4	1	23	501	524	501	524	0.97
8	17	0.00016	0.008	16.8	1.4	2	23	532	553	531	553	0.96
9	17	0.004	0.2	12.4	0.2	2	21	580	599	579	600	0.94
10	17	0.0044	0.21	12.3	2.4	1	23	655	678	655	678	0.98
11	17	0.066	3.2	8.6	2.7	1	23	715	738	715	738	0.95
12	17	0.00022	0.011	16.4	1.6	2	23	771	793	770	793	0.95
13	17	0.00071	0.035	14.8	1.4	1	23	807	829	807	829	0.95
14	17	0.00018	0.0089	16.7	1.2	1	23	835	857	835	857	0.99
15	17	5.8e-07	2.8e-05	24.5	2.6	1	23	863	885	863	885	0.98
16	17	0.00011	0.0053	17.4	2.3	1	23	891	913	891	913	0.96
17	17	3.9e-05	0.0019	18.8	0.5	1	23	919	943	919	943	0.90

Sequence Information

Coding Sequence: ATGAAACTGCCACTCGTGTGTCGCACTTGCGATGCAAATGCTAGGGAAGCGGATAAACTAATTAATCTGGACACGCCCAGCAAGAAGTACCCAGACAAGTCGCTGGCGAGTATTCTCAGCGAACTGACCGATATCGATCTGAATGTATCCTTTGGCCAGAAGCTGCCTCATAGTCTGTGTGCCAGTTGCTGCAAAAGACTGGTCTCGGCCTTTGAGTATGTGAAACAGGCTTTGGCTGCCCATGAACTGCTGATGAAGCATCTGAATAAGGCGGCACCTAGCAGCGATTGTTTGCTAGAAGCTCCCATGGAATTGTGTGCCGAGCAGCATGTAGAGGTTAAAATGGAAACGGAAGATGCAGAAGACACCGAGGGAGACAATGACATCACCTGCACAGAGTTGCCCGAGTTGACTGAAGCCGAGGAGTATTTAGACACCAAAAGATCCATAGATCCCCTCATAATGCTCGAGGCCGTGAAGCAGGAGATGGAAACTGCACAGAAATACGTAGAGGAGGAGGAAGAGCACGACGAGGAGACACATGATTTTGAGGCTGATTTTGAGGACGACGAAGATTCCCTTGATAATCTGCCGCTGCAGCGTCGTGTTCAGAAGTGGAAGCAAGACACCAGTAAGAACCAAAAGCCTAATTTCCAGTGCAGCGAATGCCCCAAAAACTTTAAACTTGCCAAGCACTTGAAACAGCATGAATCACTTACTCACGGCAGCAGCCGCTCGCTCTTCCCTTGCTCGCTCTGCATACGCAAGTTCAGCCGCCAGGAGGCCCTGCAGTCCCATCTCAAAGTGCATCGTGACTCCAAGCGCTCAACCAATATCAGTGAGCACAAAAAGGCCAAAGCGATTGATGTCAATCTGTGCAAGCCGCATGGCTACAAGCTCATCGAGTGCATGATCTGTCAGAGTCAGTACAACAAAATAGCCGATCTTCGACGCCATCTGACGGAGCATCCGGAAATTATTACACTGGCAGGGCGTCCCAATGTGGAGCCGCAGGAGCTTGCTGAACTCTTTTACCCCGATGCTAAGAATGCTAGTGAAGAGCAATTAAAGCAATTAATACGTAAGGATTTGTCCAGTGGCAACTACCAGCGATTTTATTCGATAACCAATCAGTCTGGATATGAAATGGATCTGGACAGCTCGGAGACGGAGAGCGAGCCAGAAGCGGAGGATGAACAGCAATGTTCGACCAGCAGGTCGCGCCCTGCCAAATACAATTGTGAGCTGTGCCAGCAGAAGTATCCGAGAAAGTATCAACTTTATGACCATCAGCGTCAATCACATCCCTGGTTAGAGGCTCCCCATGTCTGTGGCCGTTGTGATGCCCGATTCGTTAGCCTGCAGCTACTGAGACACCACAACGAGTCGCAGTGTCGGAATGCACAGAAACGTTTTCTTTGCCACAAATGTCCGCTGCGTTTTCGTTGGAAACACAATCTAAGGGCTCATTTTCGTGAGCACCGAATCACCAACCAAATCTACGAGTGTCCGGACTGCAAACGTGTGTTTGATAAAAAGAAATCACTTACTGTCCATCTGTTGAGTGTACATGCCGAAGAATCTAATCTGCTGCCTTGCCAATGGTGTAGTCGCAAATTCTATCGTCGGGACTATTTGGTCAAACATCTGAAGCGTCATGGCTTACGCGAACAGGACATTCCGCTGGCCGAAACCCTAATAGCGGCGACCTCCAAACCCCATGGGGTAAAGCGCATTTCCTGTAAGATTTGTAATCTTCAATTCGAGCGCATTCACGATCTGCGTGCGCACATTCAGCTGGAGCTGAAGCTATCGCTGTCTTCCTCGTCGTCGCTGCATCAGAACTACGAATCTCTGCAGAACTATTCGATAACCAATGAATCTGGTTTTGAACTGCAGCTGGGCGATTCGGAGACGGAGGACGAAATGCCGACGGTAATGGGAACCGGCAACCGTTTGTTATACATTTGTGAGTTGTGCAGCGTGCAGTGCCGGCGCAAGTACGAAATGATCCAGCATCAGCGGACCATGCATCGCTTTGACAAGATGCCGCATGAGTGCGACAAGTGCATTTTTAAGTGTGTGTCCAAGAGCATCATGGACCATCATCAACGTGTGCAATGTGGCAGCCAGGAGAAAATGTATTCGTGCAGCCACTGTAGCTACAAATTCATGTGGCCTGAAAATCTGGAGCAACACATACACCTGCAACATGGCCAGATAACGACAGCAAACAGCTTGCAACAGTCAACCAGTGAAGACTCGAAAGTTCCAGTTAAGCCAGCTACCTCAGAGGATGTGGCAATGTTACAGTGCCCGCACTGCGATCGTACTTATCAAATGAAATCCAGGCTTAACAATCATATTCGAGATGTCCATGTAAATGGCGATCGCAAGCGCAAAGAGGCCGTGAAACTGTTCCTTTGCTCGCTGTGTGGTCGCGAGACGAAATCGGCCGCCTGCCTGGTAACTCATATGCGTCGCCACACTGGCGAAAAACCTTTCAAATGCGATCTTTGCGAAATGGCCTTCCCCCGGCACTCGGAAATGATATCGCATCGCCGCATGCATACTGGAGAGAAGCCCTTCCATTGTACTGTCTGTGGTAAAGATTTTGCACGTTCCGACAAGCTGAAGAGGCACATGTTGACGCACAGCGGCTTGAAACCGCATGCCTGCACCTACTGCGAGAAGAGCTATCGTCAGGCCAAGGATCTAAAGTTGCATCTGCAGCAGCACACTGGCGAGTGTCCCTTTATCTGTGGAACTTGTGGCGAACGTTTTATTCAGAGCAGTTCACTGGAGAAGCATCGCATGATGCGACGCCATTTTGACGAAGTGGAGGTAGCACAGAATTAG
Protein Sequence: MKLPLVCRTCDANAREADKLINLDTPSKKYPDKSLASILSELTDIDLNVSFGQKLPHSLCASCCKRLVSAFEYVKQALAAHELLMKHLNKAAPSSDCLLEAPMELCAEQHVEVKMETEDAEDTEGDNDITCTELPELTEAEEYLDTKRSIDPLIMLEAVKQEMETAQKYVEEEEEHDEETHDFEADFEDDEDSLDNLPLQRRVQKWKQDTSKNQKPNFQCSECPKNFKLAKHLKQHESLTHGSSRSLFPCSLCIRKFSRQEALQSHLKVHRDSKRSTNISEHKKAKAIDVNLCKPHGYKLIECMICQSQYNKIADLRRHLTEHPEIITLAGRPNVEPQELAELFYPDAKNASEEQLKQLIRKDLSSGNYQRFYSITNQSGYEMDLDSSETESEPEAEDEQQCSTSRSRPAKYNCELCQQKYPRKYQLYDHQRQSHPWLEAPHVCGRCDARFVSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLRAHFREHRITNQIYECPDCKRVFDKKKSLTVHLLSVHAEESNLLPCQWCSRKFYRRDYLVKHLKRHGLREQDIPLAETLIAATSKPHGVKRISCKICNLQFERIHDLRAHIQLELKLSLSSSSSLHQNYESLQNYSITNESGFELQLGDSETEDEMPTVMGTGNRLLYICELCSVQCRRKYEMIQHQRTMHRFDKMPHECDKCIFKCVSKSIMDHHQRVQCGSQEKMYSCSHCSYKFMWPENLEQHIHLQHGQITTANSLQQSTSEDSKVPVKPATSEDVAMLQCPHCDRTYQMKSRLNNHIRDVHVNGDRKRKEAVKLFLCSLCGRETKSAACLVTHMRRHTGEKPFKCDLCEMAFPRHSEMISHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHACTYCEKSYRQAKDLKLHLQQHTGECPFICGTCGERFIQSSSLEKHRMMRRHFDEVEVAQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00918346;
90% Identity: iTF_00914671;
80% Identity: -