Lfen002169.1
Basic Information
- Insect
- Lordiphosa fenestrarum
- Gene Symbol
- -
- Assembly
- GCA_035044985.1
- Location
- JAWNNO010000731.1:1135666-1140378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.1 69 4.6 4.6 2 23 243 265 242 265 0.96 2 15 0.25 16 6.6 0.0 1 23 275 300 275 300 0.93 3 15 0.022 1.4 9.8 2.4 2 23 311 332 311 332 0.93 4 15 0.0051 0.32 11.9 0.6 3 23 402 422 400 422 0.95 5 15 5e-05 0.0032 18.2 0.1 1 23 430 453 430 453 0.98 6 15 0.0012 0.075 13.9 0.3 2 23 460 481 459 481 0.97 7 15 0.007 0.45 11.4 1.7 1 22 529 550 529 553 0.90 8 15 0.0026 0.17 12.8 0.3 1 23 598 623 598 623 0.97 9 15 0.3 19 6.3 1.3 2 23 646 668 645 668 0.93 10 15 0.0014 0.092 13.6 0.4 2 23 674 696 673 696 0.92 11 15 0.021 1.4 9.9 0.4 2 23 700 722 699 722 0.94 12 15 1.8e-05 0.0012 19.6 1.1 1 23 728 750 728 750 0.97 13 15 0.0041 0.26 12.2 1.5 1 23 754 777 754 777 0.93 14 15 5.2e-06 0.00033 21.3 1.4 1 23 783 806 783 806 0.97 15 15 0.0013 0.084 13.7 0.3 5 23 819 838 812 838 0.90
Sequence Information
- Coding Sequence
- ATGACGGAAAACACAAAACCTAGCTGCCTGCATTGTAGAGTCCATAATGCAAAGCTCCAATACCAAGAAGTATTTGATGAATTTGGTGTGGAACTTGGCTTGCAAGAGCTGCTGGCCAAACATTTTCAGCTCAATGTGGTGGCCAACAAGCAACCGCAGCTGCTGTGCGAGGTGTGCGTGAACAGTTTGATACGATTGTTTGATATAGATGAGCTGCAACGACAACAGGAAGCGGCGGTGGCTAAACCCAAGTTAGTCACCGCCAAGAAGTCAAGAAATCCGGTAAAAGCCGCAAAGCCCGGTGTTCAAACACGGCAAGCAACTGCACGCAAAATTCCAACCAATAAAGACGCCGACCAGGAGCAGATTAGTGCACTCATACGCAATATTCTATACGAAGATGAAATTGAAGTGGCTAAAGATGTGGCCCCAGCTGCAGCTGAACCAGAGCTGGATGaggcagagtttgtatttgaACATGAGGATATACCAGCCTCAGCCTTGGAAGAGGTTAGCGTCAAATCGGAGATACGTCGTTCGTCCAATCAATTGCCCGTGGATCTGGATGATAGTCAGGAGAGCGATAACGCTGACAACGGAGATGATACTGTGGCAGTCATccttttcaattcaatcaaaGAAAAAGATGACATAGCTGACCTATATGAGTATTTGTCCACTGTGGTCAAGACCAGATTTGAGAATCTTACCTTTGACTGGAACACTGTGTGCCAACATTGTAACCAGAAATGTGCCACCTTTCAGAGCATAATGGAACACATGCTTAAGCGTCACAAGCTGTCGGAAGAAGGCAGCGATTGTTACGCTTGTCCCATTGTGGATTGCCAGCAAAAGCTACGGGGTAAAAGTGGCTTAGCCTTGCATCTGGTGGTACTACACGGTCCGGTGTCCGACATTACCATATATGGCAGCTGTCCCGAATGCAAGTTGACTTTCTCCAACTTGCTGCAGTATAACAAACATTCCTGTGCCCATATGATCAAGAAGAAGCGTGGAGTGCGTTTATATTGCGAAATGTGCCGCATAGAGTTTCCCTCCTGGAAGCGTTTCAACTTCCACAATCAATTCCATTTGGACAAGCATCGTCCGCGTGCCTGTTTTGTGTGCAATCATACAGATAATAACATTGATGAACTGTTCCAGCATTTGCATTATGCCCATGAACCCGAGGGAACACTTTTCTGTGATCTCTGCGATCGCACTTTTCGGGATCAGGCTGTGTTTATGGAGCACAATAAGTCACATACGAATGTAAGCAGCAGTTCATACCCCTGCTCCGAGTGTGGTGCCAATTTTGAGACGCGTGGCCGTCTGAATGGTCATATGCGCACCATGCATATGCATGGCACCATTATCAGCTGTGAGATGTGCTCCCGGGAGTTTGCCACAGAGGCAACCTACAGCATACACATGAAGAAGCATTTGATTATTGAGCGGCATGTCCATATCTGTAGCAATTGTGGCCAATTAAGTGAGCATCAGGAAAAAACTGTGGCCCATGTGGAGAATGAGGAATCTGCCTGTCTGGGACAGGAGTACTATACTGAATTGCTGCGAGATGCTTACATCTGTGAATATTGCTCTTGCTACTTTAAGGAGAAGACCGATTTGCGTGCGCATCGTGAGTCGGGCGTGCACAAGGATGGTTTATTCTGGTGCCAGCCTTGTTGCAAGGAGTTTACCGACATGAAATTGTATCGCCATCATTTGCGTAATTTCCAGCAATTACGTTCGGATGTGGCTCATCGACGGCTGGAGATTTGTTTGTACTACATGTGCGATCAGGGGGACTGTCAGGAGGCCTACGCCAACTGGAATTCCTTATACACACACAAGCGACGCACTCATGAATCTCTACACAGACAATTAAAGCAGCAACAGGAGCAGGCGTCTGCCAAACCAAATCAGGAATGGATATGCCAATTCTGTTTGAAGGAATGCCGCTCAAAGATGTCGCTCTCGGTACATGTGGCACGCAGTCACAACAATGACAATGTGGTCTGCTCCTTGTGCAATGCTTCATACAAAAGTCAAGAGGCCCTGCAGAAACATCATGCCTACTGGCATGAACCTATCGAGTGTCCCAAATGCTTTAAGATAGTGAAAAATCGTCGTAATTTTGATACCCATGAAAATGTTGTGCACTCTAATAACAAAAGGTATGCCTGCAGTGTGTGTGATAAGGGATTCTATCATAAGAGCGAAATGGAAGCTCATCAAAAGCTCCACTCGCAGTCCTACAGCTGCAAGCAGTGCAACTTTACCACCCGGAACAAAAAATCCTTATCCGTTCATGTGTTGGGTCAACACTACAAGCGGTTTGCCTTCGAGTGTAAGGTGTGTGACAAGCGTTTTGGTCGTCGCCAGGGTCTAACCACACACATGCAGCGTTCACATGGCTCCAAGCTGCTGTGCAAGGACTATTTCGAGGAAGGATGTGGACGTAGCTTTGCCACCACCAGCCAACTGAGCATGCATGTGAAAAAAGTGCACAAGGGCACCATTTACCTAAGCGATGACACGATGGACGATAAGGACTATGCCAGTGATGAGCCAACTACGTCGAAGAAACGTTGCTTCAAAATTGACGAGGATACCAGAATCGAGTTTgtcggcgacgacgacgatgagcTGGTGGTGGAGGAGGATGAAGAGTTCGAGTAA
- Protein Sequence
- MTENTKPSCLHCRVHNAKLQYQEVFDEFGVELGLQELLAKHFQLNVVANKQPQLLCEVCVNSLIRLFDIDELQRQQEAAVAKPKLVTAKKSRNPVKAAKPGVQTRQATARKIPTNKDADQEQISALIRNILYEDEIEVAKDVAPAAAEPELDEAEFVFEHEDIPASALEEVSVKSEIRRSSNQLPVDLDDSQESDNADNGDDTVAVILFNSIKEKDDIADLYEYLSTVVKTRFENLTFDWNTVCQHCNQKCATFQSIMEHMLKRHKLSEEGSDCYACPIVDCQQKLRGKSGLALHLVVLHGPVSDITIYGSCPECKLTFSNLLQYNKHSCAHMIKKKRGVRLYCEMCRIEFPSWKRFNFHNQFHLDKHRPRACFVCNHTDNNIDELFQHLHYAHEPEGTLFCDLCDRTFRDQAVFMEHNKSHTNVSSSSYPCSECGANFETRGRLNGHMRTMHMHGTIISCEMCSREFATEATYSIHMKKHLIIERHVHICSNCGQLSEHQEKTVAHVENEESACLGQEYYTELLRDAYICEYCSCYFKEKTDLRAHRESGVHKDGLFWCQPCCKEFTDMKLYRHHLRNFQQLRSDVAHRRLEICLYYMCDQGDCQEAYANWNSLYTHKRRTHESLHRQLKQQQEQASAKPNQEWICQFCLKECRSKMSLSVHVARSHNNDNVVCSLCNASYKSQEALQKHHAYWHEPIECPKCFKIVKNRRNFDTHENVVHSNNKRYACSVCDKGFYHKSEMEAHQKLHSQSYSCKQCNFTTRNKKSLSVHVLGQHYKRFAFECKVCDKRFGRRQGLTTHMQRSHGSKLLCKDYFEEGCGRSFATTSQLSMHVKKVHKGTIYLSDDTMDDKDYASDEPTTSKKRCFKIDEDTRIEFVGDDDDELVVEEDEEFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00914714; iTF_00918406; iTF_00920074; iTF_00919325; iTF_00916535;
- 90% Identity
- iTF_00914714;
- 80% Identity
- -