Lcol004820.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000112.1:352794-359396[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.053 2.6 8.9 3.7 2 23 243 265 242 265 0.96
2 16 0.011 0.52 11.1 0.0 1 23 277 302 277 302 0.94
3 16 0.021 1 10.2 2.5 2 23 313 334 313 334 0.93
4 16 0.006 0.29 11.9 0.6 3 23 404 424 402 424 0.95
5 16 0.00052 0.026 15.2 0.6 1 23 432 455 432 455 0.97
6 16 0.0019 0.095 13.4 0.3 2 23 460 481 459 481 0.97
7 16 6.7 3.3e+02 2.3 0.2 1 20 489 508 489 510 0.85
8 16 0.002 0.099 13.4 1.6 1 22 529 550 529 553 0.90
9 16 0.024 1.2 10.0 0.2 1 23 598 623 598 623 0.97
10 16 0.35 17 6.3 1.3 2 23 645 667 644 667 0.93
11 16 0.0017 0.083 13.6 0.4 2 23 673 695 672 695 0.92
12 16 0.025 1.2 9.9 0.4 2 23 699 721 698 721 0.94
13 16 8.4e-06 0.00041 20.9 1.1 1 23 727 749 727 749 0.97
14 16 0.0048 0.24 12.2 1.5 1 23 753 776 753 776 0.93
15 16 1.4e-05 0.00066 20.2 1.2 1 23 782 805 782 805 0.96
16 16 0.0011 0.052 14.3 0.2 3 23 811 837 809 837 0.85

Sequence Information

Coding Sequence
ATGACGGAAAACGCAAAACCTAGCTGCCTGCATTGTAGAGTCGTCAATGCAAAGTTCCAGTACCAGGAAATATTTGATGAATTTGGTGTGGAACTGGGATTGCAGGAGTTGCTGGCCAAACACTATCAACTCAATGTGGTGGCCAATCCCAGGCAATCGCAGCTGCTATGCGAGGTGTGCGTGAACAGTTTGATACGATTGTTTGACATAGATGAGCTGCAGCGCCAACAGGAAGTGGCCAAAACAGTTGCGACTAAGAACATAACGAGTCCAGTAAAAGCGGAAAAGCCTGTGGTAACCTCTGTTGTCAAATCACGCAAAAATACCTCTTCGCCGCCGGTAACCACCAACAAAGAGTCGGACCAAGAGCAGCTTAGTGCACTCATAAGCAATATTCTATATGAAGATGAAGTTGAAGCTGCCAAAGATGTGGTCCCAGCCGCAGCTGAACCCGAGCTGGATGAGGTTGAGTTTGTATTTGAGCATGAGGATATACCGGCGTCTGACTTGCAGGAGGTCAACATTAAATCGAAGCTACGTCGTACTGCCAATCAATTGCCTGTGGAACTGGATGAGAGTCCAGAGGAGAGCGACAACGCAGATGAGAATGTGGCAGTCATCCATTTCAATACAATCAAAGAAAATGATGACATATCTGATCTTTATGATTATTTGTCCACTGTGGTCAAGACCAAATTTGAGAATCTTACCTTTGAATGGAACACTGTGTGCCAACATTGTAACCTGAAATGTGCCACCTATGAAACTCTGCTAGAGCACATGCTTAAGCGACACCAGCTGCCAGATGAACAAGGCGATTGCGATTGTTATGCTTGTCCCATTTTGGATTGCCCTCAAAAGCTAAAGGATAAAAGTTCTTTAGCCTTGCATTTGGTGGTACTACACGGTCCTGTAGCAGACATTACCATATATGGCAGCTGTCCCGAATGCAAGATGACCTTCTCCAACTTGCTGCAGTATAACAAACATTCCTGTGCCCATATGATCAAGAAGAAGCGTGGAGTGCGTCTATATTGCGAAATGTGCCGCATTGAGTTTCCCTCCTGGAAGCGTTTCAATTTCCACAATCAATTCCATTTGGAGAAGCATCGACCCCGGGCCTGTTTTGTGTGTAACCATACGGATAATAACATTGATGAACTGTTCCAGCATTTGCATTATGCCCATGAACCCGAGGGTACACTCTTCTGTGATCTCTGCGATCGCACTTTTCGGGATCAGGCTGTGTTTATGGAGCACAATAAGTCACATGCCAATGTAAGCAGCAGCACCTTTCCCTGCTCCGAGTGTGGTGCCAATTTTGAGACACGTGGGCGTCTCAATGGTCATATGCGTCATATGCATGGCACCACTATCAGCTGTGAGATGTGCTCCCGTGAGTTTGCCTCGGAGGCCACCTATAGCATACACATGAAGAAGCATTTGATTATTGAGCGGCATGTGCATATCTGTAGCAATTGTGGTCAATTAAGTGAGCATCAGGAAAAGATGGTGGCCCATGTGGAGAATGAGGAATCTGCTTGTGTGGGACAGGAGTTCTATACTGAATTGCTGCGAGATGCTTACATCTGTGAATATTGCTCTTGTTACTTTAAGGAAAAGTCCGATTTGCGTGCTCATCGTGAGTCGGGCATACACAAGGATGGTTTATTTTGGTGCCAGCCTTGTTGTAAGGAGTTTACCGACATGAAATTGTATCGTCATCATTTGCGCAATTTCCAGCAATTGCGTTCGGATGTGGCTCATCGACGGCTGGAGATTTGTTTGTACTACATGTGCGATCAGGGGGACTGCCTGGAGGCCTATGCAAACTGGAACTCCTTATACACCCACAAGCGACGCACTCATGAATCTAGCCATAGACAATTAAAGCTGCAACAGCAGTCCCCCGCCAAGCCAAATCAGGAATGGATATGCCAATTCTGTTTGAAAGAATGTCGCTCGAAGATGTCGCTCTCGGTACATGTGGCACGCAGTCACAACAATGACAATGTGGTTTGTTCCTTGTGCAACGCCTCCTACAAAAGTCAAGAGGCACTGCAGAAACATCATGCCTACTGGCATGAACCTATCGAGTGTCCAAAATGCTTTAAGATAGTCAAAAATCGTCGAAATTTTGATACCCACGAAAATGTAGTCCACTCCAATAACAAACGTTATGCCTGCACTGTGTGTGATAAGGGATTCTATCACAAGAGCGAAATGGAAGCTCATCAAAGGCTCCATTCGCAATCCTACAGCTGCAAGCAGTGCAACTTTACCACCAGAAATAAAAAATCCTTATCCGTTCATGTGTTGGGTCAACATTACAAGCGTTTTGCCTTCGCGTGCAAGGTGTGTGACAAGCGTTTTGGTCGTCGCCAGGGTTTAACCACACATATGCAGCGTTCACATGGCTCCAAGTTGGTGTGCAAGGATTATTTCGAGGAGGGATGTGGACGTAGTTTTCCTACTACAAGTCAACTGAGCATGCATGTAAAAAAAGTGCACAAGGGCACTATTTACTTAAGCGACGACATGATGGACGATAAGGACTATGCCAGCGATGAGCCAACTTCGTCTAAGAAACGTTGCTTTAAAATTGACGAGGAAACCAACATTGAGTTTATGGGCGAAGAGGATGAGCTGGTGGAGGAGGATGAAGAGTTTGAGTAA
Protein Sequence
MTENAKPSCLHCRVVNAKFQYQEIFDEFGVELGLQELLAKHYQLNVVANPRQSQLLCEVCVNSLIRLFDIDELQRQQEVAKTVATKNITSPVKAEKPVVTSVVKSRKNTSSPPVTTNKESDQEQLSALISNILYEDEVEAAKDVVPAAAEPELDEVEFVFEHEDIPASDLQEVNIKSKLRRTANQLPVELDESPEESDNADENVAVIHFNTIKENDDISDLYDYLSTVVKTKFENLTFEWNTVCQHCNLKCATYETLLEHMLKRHQLPDEQGDCDCYACPILDCPQKLKDKSSLALHLVVLHGPVADITIYGSCPECKMTFSNLLQYNKHSCAHMIKKKRGVRLYCEMCRIEFPSWKRFNFHNQFHLEKHRPRACFVCNHTDNNIDELFQHLHYAHEPEGTLFCDLCDRTFRDQAVFMEHNKSHANVSSSTFPCSECGANFETRGRLNGHMRHMHGTTISCEMCSREFASEATYSIHMKKHLIIERHVHICSNCGQLSEHQEKMVAHVENEESACVGQEFYTELLRDAYICEYCSCYFKEKSDLRAHRESGIHKDGLFWCQPCCKEFTDMKLYRHHLRNFQQLRSDVAHRRLEICLYYMCDQGDCLEAYANWNSLYTHKRRTHESSHRQLKLQQQSPAKPNQEWICQFCLKECRSKMSLSVHVARSHNNDNVVCSLCNASYKSQEALQKHHAYWHEPIECPKCFKIVKNRRNFDTHENVVHSNNKRYACTVCDKGFYHKSEMEAHQRLHSQSYSCKQCNFTTRNKKSLSVHVLGQHYKRFAFACKVCDKRFGRRQGLTTHMQRSHGSKLVCKDYFEEGCGRSFPTTSQLSMHVKKVHKGTIYLSDDMMDDKDYASDEPTSSKKRCFKIDEETNIEFMGEEDELVEEDEEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00917451;
90% Identity
-
80% Identity
-