Lmom015695.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- -
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000005.1:1360808-1371833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.51 29 5.4 2.9 2 23 293 315 292 315 0.92 2 17 7.3 4.1e+02 1.8 0.1 1 23 324 349 324 349 0.90 3 17 0.042 2.4 8.8 2.2 2 23 360 381 360 381 0.93 4 17 0.0068 0.38 11.3 1.1 3 23 451 471 449 471 0.95 5 17 1.3e-05 0.00073 19.9 0.8 1 23 479 502 479 502 0.98 6 17 0.00061 0.035 14.6 0.3 2 23 507 528 506 528 0.97 7 17 4.6 2.6e+02 2.4 0.3 1 14 536 549 536 556 0.71 8 17 0.0044 0.25 11.9 1.1 1 22 576 597 576 600 0.90 9 17 2 1.1e+02 3.6 2.8 3 21 607 625 607 626 0.93 10 17 0.019 1.1 9.9 0.2 1 23 645 670 645 670 0.97 11 17 0.28 16 6.2 1.3 2 23 692 714 691 714 0.93 12 17 0.0014 0.078 13.5 0.4 2 23 720 742 719 742 0.92 13 17 0.049 2.8 8.6 0.2 2 23 746 768 745 768 0.94 14 17 5.7e-06 0.00032 21.0 1.6 1 23 774 796 774 796 0.98 15 17 0.01 0.58 10.8 1.6 1 23 800 823 800 823 0.93 16 17 4.7e-05 0.0027 18.1 2.0 1 23 829 852 829 852 0.97 17 17 0.00059 0.034 14.7 0.2 5 23 865 884 858 884 0.90
Sequence Information
- Coding Sequence
- ATGACGGAAAACTCAAAACCAAATATAAATCCTAGCTGCCTGCATTGTAGAGTATACAATCCAAAGTTTCAATACCAGGAGATTTTTGATGAATTTGGTGTGGAACTTGGATTGCAAGAGTTGCTGGCCAAACATTATCAACTCAATGTGGTGGCCAATGCCAGGCAGTCGCAGCTGCTATGCGAGGTGTGTGTGAACAGTTTGATACGACTATTTGACATAGATGAGCTGCAAAGACAACAGGAAACGGCGGCTGAGAACAAAAGCAACCCGGCATCGCCAACCAAATCAGCGCCCGACAAGACAACATCCAACATCCAGCCTGCCAAGACTTCACCCAAGGCAGTCACAGGCAAGAAGATAACACGAGTGGAAAAGTTGCCAGTTGCCTGCGGTGTCAGGACTCGGCAATCAAACAAGCCCCAAGCAAAAGAAACATCCGCATCCCAAGTAAAGACTCAATTAACCCACAAAGAGTCCGAACAGGAGCAGATTAGTGCACTCATACGCAACATACTATATGAAGATGAATCAGAGGCTCCTAAAGATGTGCCCACAGCCGAGGCAATTGAAACAGATGAGCCAGAACTTGATGAGGATGAGTTTGTTTTTGAGCATGAGGATATTCCATCTACTGACTTGGACGAGGTTCAGATCAAGTCGGAAATGCGTAGTTCATCCAATCAGTTGCCCGAGGAACTGGATGACAGTCAAGAGAGCGACAATGTGGACAACGAGGATGAAAGCGAGGCGGGCAAAGTGTCAGTCATCAGTTTTAATTCAATCAAAGAAAAGGACGACATAGCTGATCTATATGAGTATTTATCCACTGTGGTCAAGACCAAATTTGAGAACTTAACCTTTGATTGGAACACTGTGTGCAAAGTGTGCTCCCAGAAATGTACGACATATCAAACTCTGCTGGAGCACACGGTTAGGCGACACAAGCTGGCAGAATTAGGCGGTGGTTATGCTTGTCCCATTGTGGGTTGCATACAAAAGCTAAAGGATAAACATTTATTAGCCCTGCATTTGGTGGTACTACACGGTCCTGTGGCAGACATTACCATTTATGGCAGCTGTCCCGAATGCAAGATGACTTTCTCCAATATACTGCAGTATAACAAACATTCCTGTGCCCATTTGATCAAGAAGAAGCGTGGAGTGCGTTTATATTGCGAAATGTGCTCGGTGGAGTTTCCCTCCTGGAAGCGTTTTAATTTCCACAATCAATTCCATTTGGAGAAACATCGACCGCGTGCTTGTTTTGTCTGCAATTATGCGGATAACAATATTGATGAACTTTTCCAGCACTTGCATTATGCCCATGAACCCGAGGGTACACTCTTCTGTGATCTCTGCGATCGCACTTTTCGTGATCAGACGGTGTTTATGGAGCACAATAAATCCCATGCCAATGTTAGCAGCAGCACCTTTACCTGTACGGAGTGTGGTGCCAATTTTGATACACGCAGTCGTCTCAATGGTCATATGCGCACCAGGCATGGCACCGTTATTAGCTGTGAGCTGTGCTCCCGTGAATTTGCCACTGAGGCCACCTATACCATACACATGAAGAAACATTTGATCATTGAGCGGCATGTTCATGTCTGTAGCCATTGTGGCCAGTTGAGTGAACATCAGGATAGAATTTTGGCCCATGTTGAAAATGAGGATTCGGCTTGCCTGGGCCAGGAGTTCTCTACGGAATTGCTGCGGGATGCTTACATCTGTGAATATTGCTCTTGCTACTTTAAGGAAAAAGCCGATTTGCGTGCGCATCGAGAGTCTGGCATACACAATGATGGTTTATTTTGGTGTCATCCTTGTTTTAAGGAGTTTACCGACATGAAATTGTATCGCCATCATTTGCGTAATTTCCAGCAATTGCGTTCGGATATGGCTCATCGCCGACTGGAGATTTGTTTGTACTACATGTGCGATCAGGGGGACTGCCTAGAGGCTTATGCAAATTGGAATTCTTTGTACACCCACAAGCGACGCACTCATGAATCAGCCAACAGACAGTTAAAGTTGGATGAGCAACAGTCTACAAAACCGACACAGGAATGGATATGTCAATTCTGTTTGAAAGAATGCCGCTCCAAAATGTCGCTATCGGTTCATGTCGCACGCAGTCACAACAATGACAATGTGGTTTGCTCCTTGTGCAATGCTTCCTACAAAAGTCAAGAGGCCTTGCAGAAGCATCATGCCTACTGGCATGAACCAATCGAGTGTCCGAAATGCTTGAAGATCGTCAAGAATCGTCGTAATTTTGATACCCACGAGAATGTTGTGCACTCCAATAACAAACGTTATTCATGCAGTGTGTGTGATAAGGGATTCTACCACAAGAGCGAAATGGAGGCTCATCAGCGGCTCCATTCGCAATCTTATAGTTGCAAGCAATGCACGTTTACCACCAGAAACAAAAAATCTTTATCCGTTCACGTTTTGGGTCAACATTACAAACGTTTTGCTTTCGAGTGTAAGCTGTGCAGCAAGCGTTTTGGTCGTCGCCAGGGTTTAACCACACATATGCAGCGTTCGCATGGCTCCAAGCTTCTGTGCAAGGAATATTTCGAGGAAGGATGTGGACGTAGCTTTGCTACCACCAGCCAACTGAGCTTGCATGTGCGTAAAGTGCACAAAGGCACCATATACCTAAGCGATGAGATGATGGAGGATAATGATGCCAGTGATGAGCCATCCTCTTCAAAGAAACGTTGCTATACAATTGACGAAGATACCAAAATAGAGTTTATTGGCGATGAAGCTACCGAAGAGGATGAGGAGGAGGATGTGGAGGCATCATCATTGGAGTTCGAGGAGTTTCAGAAAAATTAA
- Protein Sequence
- MTENSKPNINPSCLHCRVYNPKFQYQEIFDEFGVELGLQELLAKHYQLNVVANARQSQLLCEVCVNSLIRLFDIDELQRQQETAAENKSNPASPTKSAPDKTTSNIQPAKTSPKAVTGKKITRVEKLPVACGVRTRQSNKPQAKETSASQVKTQLTHKESEQEQISALIRNILYEDESEAPKDVPTAEAIETDEPELDEDEFVFEHEDIPSTDLDEVQIKSEMRSSSNQLPEELDDSQESDNVDNEDESEAGKVSVISFNSIKEKDDIADLYEYLSTVVKTKFENLTFDWNTVCKVCSQKCTTYQTLLEHTVRRHKLAELGGGYACPIVGCIQKLKDKHLLALHLVVLHGPVADITIYGSCPECKMTFSNILQYNKHSCAHLIKKKRGVRLYCEMCSVEFPSWKRFNFHNQFHLEKHRPRACFVCNYADNNIDELFQHLHYAHEPEGTLFCDLCDRTFRDQTVFMEHNKSHANVSSSTFTCTECGANFDTRSRLNGHMRTRHGTVISCELCSREFATEATYTIHMKKHLIIERHVHVCSHCGQLSEHQDRILAHVENEDSACLGQEFSTELLRDAYICEYCSCYFKEKADLRAHRESGIHNDGLFWCHPCFKEFTDMKLYRHHLRNFQQLRSDMAHRRLEICLYYMCDQGDCLEAYANWNSLYTHKRRTHESANRQLKLDEQQSTKPTQEWICQFCLKECRSKMSLSVHVARSHNNDNVVCSLCNASYKSQEALQKHHAYWHEPIECPKCLKIVKNRRNFDTHENVVHSNNKRYSCSVCDKGFYHKSEMEAHQRLHSQSYSCKQCTFTTRNKKSLSVHVLGQHYKRFAFECKLCSKRFGRRQGLTTHMQRSHGSKLLCKEYFEEGCGRSFATTSQLSLHVRKVHKGTIYLSDEMMEDNDASDEPSSSKKRCYTIDEDTKIEFIGDEATEEDEEEDVEASSLEFEEFQKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917451;
- 90% Identity
- -
- 80% Identity
- -