Lsta011695.1
Basic Information
- Insect
- Lordiphosa stackelbergi
- Gene Symbol
- -
- Assembly
- GCA_018904235.1
- Location
- JAEIFU010001018.1:59141-65400[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 5.9 7.4 4.8 2 23 245 267 244 267 0.95 2 17 0.068 2.9 8.3 0.1 1 23 276 301 276 301 0.94 3 17 0.018 0.77 10.2 2.5 2 23 312 333 312 333 0.93 4 17 0.0051 0.22 11.9 0.6 3 23 403 423 401 423 0.95 5 17 0.00019 0.0082 16.4 0.5 1 23 431 454 431 454 0.98 6 17 0.0025 0.11 12.9 0.2 2 23 459 480 458 480 0.97 7 17 8.9 3.9e+02 1.7 0.2 1 19 488 506 488 509 0.81 8 17 0.0017 0.074 13.4 1.6 1 22 528 549 528 552 0.90 9 17 1.6 68 4.0 1.4 3 21 559 577 559 578 0.89 10 17 0.0079 0.34 11.3 0.4 1 23 597 622 597 622 0.97 11 17 0.3 13 6.3 1.3 2 23 644 666 643 666 0.93 12 17 0.0014 0.062 13.6 0.4 2 23 672 694 671 694 0.92 13 17 0.021 0.92 9.9 0.4 2 23 698 720 697 720 0.94 14 17 2.8e-05 0.0012 19.0 1.0 1 23 726 748 726 748 0.97 15 17 0.0029 0.13 12.6 1.6 1 23 752 775 752 775 0.94 16 17 2.3e-06 9.8e-05 22.4 1.2 1 23 781 804 781 804 0.97 17 17 0.0028 0.12 12.7 0.2 5 23 817 836 810 836 0.90
Sequence Information
- Coding Sequence
- ATGACAGAAAACACAAAACCTAGCTGCCTGCATTGTAGAGTAGTTTACAATTCAAATTTACAATATCAGGAAATTTTTGATGAATTCGGTGTGGAACTTGGATTGCAGGAGTTGCTGGCCAAACACTTTCAACTCAAGGTGGTGGCCAATCCCAGGCAGTCGCAGCTGCTATGCGAGGTGTGCGTAAATAGTTTGATACGCTTATTTGATATAGATGAGCTGCAACGACAACAAGAAGAAGCGGAGGCTAAAAACAAAGCCAAGACCTCACCCGGTGTCCAGACACGGCAATCCACCTTAAGCAAAACTAAAACTCCGCCTCTGGTGGCACACAAAGAGGCTGACCAGGAGCAAATTAGTGCACTTATACGCAATATTTTGTATGAAGATGAAGCTGAAATTACTGAAGATGGGCGGCCCACAGTGGCAAATGAGCCAGAGCTGGATGAGGCAGAGTTTGTGTTTGAACATGAGGATATATCATCCTCAGCTTTGGATGAGGTTCAAATCAAGTCAGAGTTACGTCCTTCAATCAATCAATTGCCTGTGGAACTGGATGATAGTCAAGACAGCGATAATGCGGACAATGAAGATGAAAGCGAGGCTGGAGTCCAAGTGGCAGTGATTAATTTCAATTCAATTAAAGAAAAGGATGGCATAAATGATTTATATGAGTATTTGACGACGGTGATCAAGACCAGATTTGAAAACCTTAACTTTGATTGGAACACGGAATGCAAACATTGTAAACAGAAATGTGTAAACTATCAATCCCTGCTGGAGCATATGGTAAAAAGTCACAAGCTGTCAGAAAAAGGCTATGGTTATAATTGTCCCTTGGTGGATTGTGAAGAAAAGTTGAAGAATAAAAATACTTTGGCCTTGCATTTGGTTATACTACACGGTCCGGTGGCAGACTTGACCATTTATGGCAGCTGTCCTGAATGCAAAATGACTTTCTCCAATTTGCTGCAATATAACAAACATTCCTGTGCCCATATGATCAAAAAGAAGCGTGGAGTACGTTTATATTGCGAAATGTGCAGCTTAGAGTTTCCCTCCTGGAAGCGTTTCAATTTCCATAATCAATTCCATTTGGAGAAACATCGTCCGCGTGCCTGTTTTGTTTGCAACTTTAAGGACAATAACATTGATGATTTGTTTCAGCATTTGCATTATGCCCATGAACCCGAGGGTACTCTCTTCTGCGATCTCTGCGATCGCACTTTTCGTGATCAGGCGGTGTTTATGGAGCACAACAAATCGCATGCGAATGTCAGCAGCAGCACCTTTTCCTGCTCTGAATGTGGTTCCAATTTTGACACTCGTGGACGTCTCAATGGTCATATGCGCACCATGCATGGCACCGCCATCAGTTGTGAGCTATGCTCTCGTGAATTTGCCTCTGAGGCTACGTATTCCATACACATGAAGAAGCATTTGATTATTGAGCGTCATGTTCATATTTGTAGCAATTGTGGCCAATTAAGTGAACATCAGGAAAAAATTATGGCCCATGTAGAAAATGAGCAACTGTCTTGTCTGGGTCATGAGTTCTATACGGAATTGCTAAGAGATGCTTACATTTGTGAATATTGTTCCTGCTATTTCAAGGAAAAGTCTGATTTGCGTGCTCATCGTGAGTCGGGCATACACAAGGATGGTTTATTTTGGTGTCAGCCTTGTTTCAAGGAGTTTACCGACATGAAATTGTATCGTCATCATTTGCGTAATTTCCAGCAATTACGTTCGGATGTGGCTCATCGTCGTTTGGAGATTTGTTTGTACTACATGTGCGATCAGGGTGACTGCCTGGAGGCCTATTCAAATTGGAATTCTTTATACACCCACAAGCGACGCACTCATGAATCGTCCAACAGACAGCTCAAGTTGGCACAGCCGCAGTCCTCTAAACCCCAGCAGGAATGGATTTGCCAATTCTGTTTGAAAGAATGCCGCTCTAAAATGTCGCTCTCAGTTCATGTGGCACGCAGTCACAACAATGACAATGTGGTTTGCTCCTTGTGCAATGCTTCCTATAAAAGTCAAGAGGCCCTGCAGAAACATCATGCCTATTGGCATGAACCCATCGAGTGTCCCAAATGCTTTAAAATAGTCAAGAATCGTCGCAATTTTGATACACATGAAAATGTTGTTCACTCCAATAACAAACGTTATGCATGCAGTGTGTGTGAAAAGGGATTCTATCACAAAAGCGAAATGGAAGCTCATCAAAGGCTCCATTCGCAGTCCTACAGTTGCAAGCAATGCAACTTTACCACCAGAAATAAAAAATCCTTATCCGTTCATGTCATGGGTCAACATTACAAGCGTTTTGCCTTCGAGTGCAAGGTTTGTGGCAAACGTTTTGGTCGTCGTCAGGGTTTAACCACTCACATGCAGCGTTCACATGGCTCCAAGCTGCTGTGCAAGGAATATTTCGAGGAAGGATGTGGACGTAGTTTTGCTTCCACCAATCAACTGAGCATACACGTAAGAAAAGTGCACAAGGGAACAATTTACCTAAGCGATGACATGATGGAGGATAAGGAGGAGGCCAGCGATGAGCCTTCCTCGTCGAAGAAACGTTGCTACAACATTGATGATGATACCAAAATTGAGTTTATTGACGATGAAGCTACGGAAGAGGATGAACAGTTGGTGGAGGAGGAGGACGAGGAGGAGGAGGAGCAGGAGGAGCTTCAGTAA
- Protein Sequence
- MTENTKPSCLHCRVVYNSNLQYQEIFDEFGVELGLQELLAKHFQLKVVANPRQSQLLCEVCVNSLIRLFDIDELQRQQEEAEAKNKAKTSPGVQTRQSTLSKTKTPPLVAHKEADQEQISALIRNILYEDEAEITEDGRPTVANEPELDEAEFVFEHEDISSSALDEVQIKSELRPSINQLPVELDDSQDSDNADNEDESEAGVQVAVINFNSIKEKDGINDLYEYLTTVIKTRFENLNFDWNTECKHCKQKCVNYQSLLEHMVKSHKLSEKGYGYNCPLVDCEEKLKNKNTLALHLVILHGPVADLTIYGSCPECKMTFSNLLQYNKHSCAHMIKKKRGVRLYCEMCSLEFPSWKRFNFHNQFHLEKHRPRACFVCNFKDNNIDDLFQHLHYAHEPEGTLFCDLCDRTFRDQAVFMEHNKSHANVSSSTFSCSECGSNFDTRGRLNGHMRTMHGTAISCELCSREFASEATYSIHMKKHLIIERHVHICSNCGQLSEHQEKIMAHVENEQLSCLGHEFYTELLRDAYICEYCSCYFKEKSDLRAHRESGIHKDGLFWCQPCFKEFTDMKLYRHHLRNFQQLRSDVAHRRLEICLYYMCDQGDCLEAYSNWNSLYTHKRRTHESSNRQLKLAQPQSSKPQQEWICQFCLKECRSKMSLSVHVARSHNNDNVVCSLCNASYKSQEALQKHHAYWHEPIECPKCFKIVKNRRNFDTHENVVHSNNKRYACSVCEKGFYHKSEMEAHQRLHSQSYSCKQCNFTTRNKKSLSVHVMGQHYKRFAFECKVCGKRFGRRQGLTTHMQRSHGSKLLCKEYFEEGCGRSFASTNQLSIHVRKVHKGTIYLSDDMMEDKEEASDEPSSSKKRCYNIDDDTKIEFIDDEATEEDEQLVEEEDEEEEEQEELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917451;
- 90% Identity
- -
- 80% Identity
- -