Lcol002062.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- nfxl1
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010001370.1:40967-44191[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.53 5.6e+03 -2.3 0.6 15 18 85 88 84 89 0.81 2 19 2 2.1e+04 -8.1 6.4 15 19 143 147 142 147 0.82 3 19 0.13 1.3e+03 -0.3 0.4 4 10 178 184 177 184 0.95 4 19 6.4e-08 0.00068 19.8 15.5 1 18 192 208 192 209 0.98 5 19 6.2e-08 0.00065 19.9 17.5 1 19 245 264 245 264 0.97 6 19 0.45 4.8e+03 -2.0 1.0 5 10 288 293 288 293 0.93 7 19 6.8e-07 0.0072 16.6 12.3 1 19 299 320 299 320 0.94 8 19 0.88 9.3e+03 -3.0 0.5 1 7 344 349 343 351 0.49 9 19 8.3e-08 0.00088 19.5 12.2 1 18 354 371 354 372 0.96 10 19 0.69 7.3e+03 -2.6 0.4 1 5 381 385 381 390 0.73 11 19 2 2.1e+04 -4.9 2.3 5 10 395 400 395 400 0.91 12 19 0.0044 46 4.4 19.2 1 18 406 423 406 424 0.97 13 19 3.5e-08 0.00037 20.7 14.6 1 19 433 451 427 451 0.90 14 19 0.00015 1.6 9.0 8.6 9 18 496 505 494 506 0.91 15 19 0.014 1.4e+02 2.8 6.6 1 12 518 528 518 528 0.96 16 19 0.85 9e+03 -2.9 1.4 6 10 577 581 576 581 0.88 17 19 3.8e-05 0.4 11.0 3.8 1 11 587 597 587 598 0.96 18 19 0.023 2.4e+02 2.1 19.8 3 18 627 642 626 643 0.91 19 19 5.5e-07 0.0058 16.9 10.8 1 16 694 708 694 714 0.92
Sequence Information
- Coding Sequence
- ATGGATAAATTTAATAAAGCTCAAGCCAAAAATATGGCCGCGGCCCAAAAGCTGGTAGAAGCCTACGCCTCCAGCTCCGAAGATGAGGGGGAACTGGATGAAAAGCATATTTTGGATTTGGTCTATAAGCACTATGAGCCCAGCTCGGACACTTCCCGCACCGCCACCTTCCTAGAGAATACCTTGCACTCGGGGGCAGCCACTTGCCTCATCTGCATAGGCAGCATACGACGCGTGGAGTCCATTTGGTCATGTCAGTCTTGCTATTGCTTCTTCCATCTGAACTGCATCCAGCGTTGGGCCAATGACAGTCTGAAGCAGCTAAAGGTGAAGGCAGAACAGCAGCAGCAAAATGGTCATCAGGGACACTACAATCATTTGGGTGAATTTGTACCCGCCAAACCAGCAAAGTCCTTACACTGGTGCTGTCCGCAGTGTCGTAAGGATTATGCGCCCACGGAGCGTCCCACCAAATACGAATGCTTCTGCGGCAAAGAAGCCAATCCTCCGGCGCAGCCCTTCCTGGTGCCACACTCGTGCGGTGAGATTTGTGGCAAGCTGCTGCAACCCAAATGCGGGCATGACTGCAAGCTATTGTGCCATCCCGGGCCCTGTCCACCCTGCGCTCAGCAGGCGCAAATCTCCTGCCTGTGTGGAAAATCTCCAGCGCGTCCCATGCGTTGCAAGGACAAGCAATGGCAGTGCCAGGTCAAATGCAATCAGCTACTGGCCTGTGGCAAACACAAATGCAATCAGAAATGTCATCGACCCGGCCAATGTCCGCCCTGCACCAGCCAGAGTAGTCAGCCCTGCGAGTGCGGCCGAGAGATGAAGCTGGTCAACTGCTCCCAACGCAAATGGAAGTGCCAAAATATTTGCGGAGCTTTATTTGCGTGTGGCCTGCACTCCTGCGAAAAGGTGTGCCATGCTGATGGACCCTGTGGTGGCTTAGAGTGTCCCTTGGGTATACGCAGCTGTCCCTGCGGCAAGAATATACAGTCCAAGGCCTGCACTGAAGCAGTGGAAACCTGTGGTGATACCTGCCAAAAGCTACTATCTTGCGGACAACACAGCTGCGCCCAACGCTGTCATCGAGGACCCTGCAATTTGTGCCTGGTCAGAACGAAAAAGAAATGTCGCTGTGGTCTGCATGAAAAGGAGCTGCCCTGCTCCAAGGAATTCACCTGTGAGACCAAATGCAAGCAAATGCGAGATTGTGGCAAACATGGCTGCAATCGCAAGTGCTGTGGGGATCAGTGTCCGCCCTGTGAGAAGATCTGTGGCAAGCAATTGAGTTGCAATAAGCATAAATGTCAATCCGTGTGCCACAATGGTCCCTGCTATCCCTGCACCATGGAATCCCAGGTCAATTGTCGTTGTGGCAAGACCAGACGAAGTGTGCCCTGCGGTCGGGAGAGAAGTGCACGCATAGTTTGTCTGGAGCTGTGTCGCATTTCAGCCAAATGTCATCATGCCATCAAGCATCGCTGCCACAAGGGCGAGTGTCCACCATGTGGTCAGGTGTGTGGTTTGCCCAACTCGGACAGTGGTTGTGGACACATTTGCAAGGCGCGTTGTCATGAGGCTATACGAGTAAGCAAGCCTCCAGCCAAAAAGTATGAATACAAATCCCTGCCACATCCACGCTGTGAGCAGAGCATCAGTGTCACTTGCATAGGCGGTCACGAGGTAGCCAACTGGCCTTGCTGGAACTCCAAACCCACTTCGTGTCAGCGTAAATGTGCGAGAAAATTGAAATGTGGAAATCATCTATGTTCCTTGGTCTGTCATGCTGTACCCACCCTATCAGATATGCAACAGCAAACTGGCTGTGCCAACTGCGTGGAAGGCTGTGCCATACCACGTCCCAACGGCTGTACACATGCCTGTCCCAAAGCATGTCATCCGCCTCCCTGCCAGCCCTGCCATTTTGTATTAAAAACCAAATGCCATTGCGAACTCAACCAGTTGGTGTACAAATGCAGTGATTACTTTGATGAGTCAGGCACGGTGCAGCAGATACTCGAGCGAAGAGAGAAACTACGCAGCTGCGGCAATCGTTGTCTGAAAAATTTCCCCTGCGGTCATCGCTGCCTGTCCATTTGCCACCCTGGCAATTGTCCCAATCCCGAATTATGCCGCAAAAAAGTGCGCATATTTTGCTCTTGCAAGAGAATCAAACAGGAGATTGCCTGTGACAAGCTGAGAGCAGGACAAACTCAACTCGATTGCGATTCCCTCTGTGAGTTGGAGCGTACGAAGGCCGCTGCTGAGGAACTGGAACAGCTAGAGCAAAAGCGCCGCCTGGAGGAGGAAAAGAATCGCCTGGAGTTGGAAAAATTTCAACAAAAGTTTGCCAAGCGCAAGCCTAAAGAACGCAAAACTTTGGACATAGAACGTACTCAACGGAAAATCAATTGGCAAAAAGTGGCCATCTATGTTGTATCTCTAGTGGCCATAGTCGGGGCACTGGCTGTGGCTTACTATGCAGAGAGTTAG
- Protein Sequence
- MDKFNKAQAKNMAAAQKLVEAYASSSEDEGELDEKHILDLVYKHYEPSSDTSRTATFLENTLHSGAATCLICIGSIRRVESIWSCQSCYCFFHLNCIQRWANDSLKQLKVKAEQQQQNGHQGHYNHLGEFVPAKPAKSLHWCCPQCRKDYAPTERPTKYECFCGKEANPPAQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQQAQISCLCGKSPARPMRCKDKQWQCQVKCNQLLACGKHKCNQKCHRPGQCPPCTSQSSQPCECGREMKLVNCSQRKWKCQNICGALFACGLHSCEKVCHADGPCGGLECPLGIRSCPCGKNIQSKACTEAVETCGDTCQKLLSCGQHSCAQRCHRGPCNLCLVRTKKKCRCGLHEKELPCSKEFTCETKCKQMRDCGKHGCNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCTMESQVNCRCGKTRRSVPCGRERSARIVCLELCRISAKCHHAIKHRCHKGECPPCGQVCGLPNSDSGCGHICKARCHEAIRVSKPPAKKYEYKSLPHPRCEQSISVTCIGGHEVANWPCWNSKPTSCQRKCARKLKCGNHLCSLVCHAVPTLSDMQQQTGCANCVEGCAIPRPNGCTHACPKACHPPPCQPCHFVLKTKCHCELNQLVYKCSDYFDESGTVQQILERREKLRSCGNRCLKNFPCGHRCLSICHPGNCPNPELCRKKVRIFCSCKRIKQEIACDKLRAGQTQLDCDSLCELERTKAAAEELEQLEQKRRLEEEKNRLELEKFQQKFAKRKPKERKTLDIERTQRKINWQKVAIYVVSLVAIVGALAVAYYAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00917729; iTF_00918727; iTF_00920342; iTF_00915000; iTF_00915903; iTF_00919565;
- 90% Identity
- iTF_00918727;
- 80% Identity
- -