Basic Information

Gene Symbol
nfxl1
Assembly
GCA_035044985.1
Location
JAWNNO010001515.1:326329-329162[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.8 6.2e+03 -2.3 0.6 15 18 85 88 84 89 0.81
2 18 3 2.3e+04 -8.1 6.4 15 19 143 147 142 147 0.82
3 18 0.19 1.5e+03 -0.3 0.4 4 10 178 184 177 184 0.95
4 18 9.6e-08 0.00074 19.8 15.5 1 18 192 208 192 209 0.98
5 18 9.7e-08 0.00075 19.8 17.4 1 19 245 264 245 264 0.97
6 18 0.68 5.2e+03 -2.0 1.0 5 10 288 293 288 293 0.93
7 18 1e-06 0.0078 16.6 12.4 1 19 299 320 299 320 0.94
8 18 1.3 1e+04 -3.0 0.5 1 7 344 349 343 351 0.49
9 18 1.2e-07 0.00096 19.5 12.2 1 18 354 371 354 372 0.96
10 18 1 8e+03 -2.6 0.4 1 5 381 385 381 390 0.73
11 18 3 2.3e+04 -4.9 2.3 5 10 395 400 395 400 0.91
12 18 0.0066 51 4.4 19.2 1 18 406 423 406 424 0.97
13 18 5.2e-08 0.0004 20.7 14.6 1 19 433 451 427 451 0.90
14 18 0.00054 4.1 7.9 9.5 10 18 497 505 495 506 0.93
15 18 0.02 1.6e+02 2.8 6.6 1 12 518 528 518 528 0.96
16 18 5.7e-05 0.44 11.0 3.8 1 11 587 597 587 598 0.96
17 18 0.034 2.6e+02 2.1 19.8 3 18 627 642 626 643 0.91
18 18 2.5e-06 0.02 15.3 11.2 1 16 694 708 694 714 0.92

Sequence Information

Coding Sequence
atggataaatttaataaagctCAAGCCAAAAATATGGCCGCTGCCCAAAAGCTGGTAGAAGCCTACGCCTCCAGCTCAGAAGATGAGGGGGAACTGGATGAAAAGCATATTTTGGATTTGGTCTACAAGCACTATGAGCCCAGCTCGGACACTTCGCGCACCGCCACCTTCCTGGAGAACACCTTGCACTCGGGTGCAGCCACTTGCCTCATCTGCATAGGCAGCATACGACGCGTGGAGTTCATTTGGTCGTGTCAGTCTTGCTATTGCTTCTTCCATTTGAATTGCATCCAGCGTTGGGCCAACGACAGTCTCAAGCAGCTGAAGGTGAAGGcagaacagcagcagcaaaatggTCATCAGGGACACTATAATCATTTGGGTGAATTTGTGCCCGCCAAACCAACCAAATCCTTACACTGGTGCTGTCCGCAGTGTCGTAAGGATTATGCGCCATCGGAGCGTCCCACCAAATACGAATGCTTCTGCGGCAAAGAAGTGAATCCTCCGGCGCAACCCTTTCTGGTGCCACATTCATGCGGTGAGATTTGTGGCAAGCTGCTGCAACCGAAATGCGGACATGATTGTAAGCTACTGTGTCATCCGGGACCCTGTCCACCCTGTGCTCAGCAGGCGCAAATCAGCTGCCTGTGCGGCAAATCTCCAGCGCGTCCCATGCGCTGCATAGACAAGCAATGGCAGTGTCAAGTCAAGTGCAATCAGCTACTGGCCTGTGGCAAACACAAATGTAGTCAAAAATGTCATCGACCCGGACAGTGTCCGCCCTGCACCAGCCAGAGTAGTCAGCCCTGCGAGTGCGGCAGAGAGAAGAAGCTGGTCAACTGCTCCCAACGCAAGTGGAAGTGCCAAAATATCTGTGGAGCTTTATTTGCCTGTGGCCTGCACGCATGCCAGCAAGTGTGCCATGCAGATGGACCCTGCGGCGGCTTAGAGTGTCCCTTAGGCACACGCAGCTGCCCCTGCGGCAAGAATATTCAGTCTAAGGCCTGCACTGAAGCAGTGGAAACTTGTGGTGATACCTGCCAGAAGCTTCTGTCTTGCGGCCAACACAGCTGCGCCCAGCGCTGTCATCGAGGACCCTGCAATTTGTGCCTGGTCAGAACGAAAAAGAAATGTCGCTGTGGGCTGCATGAAAAGGAACTGCCCTGCTCCAAGGAATTCACCTGTGAGACCAAATGCAAACAGATGCGAGATTGTGGCAAGCATGGCTGCAATCGCAAGTGCTGTGGGGATCAGTGTCCGCCCTGTGAGAAAATCTGCGGCAAGCAATTGAGTTGCAACAAGCATAAGTGCCAGTCCGTGTGCCACAATGGTCCCTGCTATCCCTGCACCATGGAATCCCAGGTGAATTGTCGCTGTGGCAAAACCAGACGAAGTGTGCCCTGCGGTCGGGAGCGCAGTGCACGAATTGTTTGCCTGGAGCTGTGCCGAATTTCAGCGAAATGTCATCATGCCATCAGGCATCGCTGCCACAAAGGCGAGTGTCCGCCCTGTGGACAGGTGTGTGGCCTCCCGAACTCAGACAGTGGCTGTGGACACATTTGCAAGGCGCGCTGTCATGAGGCCATTCGCGTAACCAAGCCGCAAGCCAAAAAGTATGAATACAAATATCTGCCACATCCACGCTGTGAGCAGAGCGTCAGTGTCACTTGCATAGGAGGTCACGAGGTGGCCACCTGGCCCTGCTGGAACTCCAAACCCACTTCGTGTCAGCGTCAATGTGCACGAAAATTGAAATGTGGCAATCATCTGTGTTCCTTGGTGTGTCATGCGGTGCCCAACCAGTCAGATATGCAACAGCAAACCGGCTGCTCCAACTGTGTGGAAGGATGTGCCATACCACGTGCCCCCGGCTGTACGCATGCGTGTCCCAAGGCCTGTCATCCGCCTCCCTGCCAGCCCTGCCATTTTGTGTTGAAAACCAAATGCCACTGTGAACTCAACCAGCTGGTGTACAAATGCAGCGACTACTTTGATGAGTCAGGCACGGTGCAGCAGATACTCGAGCGAAGAGAGAAGCTACGCAGCTGCGGCAATCGTTGTCTGAAAAATTTCCCCTGCGGTCATCGCTGCCTCTCCATTTGCCACCCTGGCAAATGTCCCAATCCCGAATTATGCCGCAAAAAGGTGCGCATATTTTGCTCTTGTAAGCGCATCAAACAGGATATTGCCTGTGACAAGCTGAGAGCAGGACAATTACAACTCGATTGTGATTCGCTTTGTGAGTTGGAGCGTTCTAAGGCTGCTGCTGTGGAACTGGAACAGCTAGAGCAAAAGCGACGCCTGGAGGAGGAAAAGAATCGCCTGGAGTTGGAGAAATTCCAGCAGAAGTTTGCCAAGCGCAAGCCTAAGGAACGTAAAACGTTGGACATAGAACGTACTCAACGGAAAATCAATTGGCAAAAGGTGGCCATCTATGCTGTATCGCTACTGGCCATAGTCGGGGCACTGGCTGTGGCTTACTATGCAGAGAGTTAA
Protein Sequence
MDKFNKAQAKNMAAAQKLVEAYASSSEDEGELDEKHILDLVYKHYEPSSDTSRTATFLENTLHSGAATCLICIGSIRRVEFIWSCQSCYCFFHLNCIQRWANDSLKQLKVKAEQQQQNGHQGHYNHLGEFVPAKPTKSLHWCCPQCRKDYAPSERPTKYECFCGKEVNPPAQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQQAQISCLCGKSPARPMRCIDKQWQCQVKCNQLLACGKHKCSQKCHRPGQCPPCTSQSSQPCECGREKKLVNCSQRKWKCQNICGALFACGLHACQQVCHADGPCGGLECPLGTRSCPCGKNIQSKACTEAVETCGDTCQKLLSCGQHSCAQRCHRGPCNLCLVRTKKKCRCGLHEKELPCSKEFTCETKCKQMRDCGKHGCNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCTMESQVNCRCGKTRRSVPCGRERSARIVCLELCRISAKCHHAIRHRCHKGECPPCGQVCGLPNSDSGCGHICKARCHEAIRVTKPQAKKYEYKYLPHPRCEQSVSVTCIGGHEVATWPCWNSKPTSCQRQCARKLKCGNHLCSLVCHAVPNQSDMQQQTGCSNCVEGCAIPRAPGCTHACPKACHPPPCQPCHFVLKTKCHCELNQLVYKCSDYFDESGTVQQILERREKLRSCGNRCLKNFPCGHRCLSICHPGKCPNPELCRKKVRIFCSCKRIKQDIACDKLRAGQLQLDCDSLCELERSKAAAVELEQLEQKRRLEEEKNRLELEKFQQKFAKRKPKERKTLDIERTQRKINWQKVAIYAVSLLAIVGALAVAYYAES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00916869;
90% Identity
iTF_00918727;
80% Identity
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