Lmom013301.1
Basic Information
- Insect
- Lordiphosa mommai
- Gene Symbol
- nfxl1
- Assembly
- GCA_018904225.1
- Location
- JAEIFT010000445.1:165080-172282[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.5 1.4e+04 -3.7 1.2 15 18 76 79 75 79 0.84 2 18 2 1.8e+04 -8.0 6.4 15 19 133 137 132 137 0.82 3 18 0.12 1.1e+03 -0.3 0.4 4 10 168 174 167 174 0.95 4 18 6.3e-08 0.00058 19.9 15.5 1 18 182 198 182 199 0.98 5 18 4e-08 0.00037 20.5 15.7 1 19 235 254 235 254 0.97 6 18 0.44 4.1e+03 -2.0 1.0 5 10 278 283 278 283 0.93 7 18 2.3e-08 0.00021 21.3 13.4 1 19 289 309 289 309 0.94 8 18 0.86 7.9e+03 -2.9 0.5 1 7 333 338 332 340 0.49 9 18 4.5e-07 0.0041 17.1 11.7 1 19 343 361 343 361 0.98 10 18 0.68 6.2e+03 -2.6 0.4 1 5 370 374 370 379 0.73 11 18 0.00035 3.2 7.9 17.2 1 18 395 412 395 413 0.97 12 18 3.2e-08 0.0003 20.8 14.7 1 19 422 440 416 440 0.90 13 18 4.2e-05 0.38 10.8 7.8 9 19 485 495 483 495 0.89 14 18 0.013 1.2e+02 2.8 6.6 1 12 507 517 507 517 0.96 15 18 0.84 7.7e+03 -2.9 1.4 6 10 571 575 570 575 0.88 16 18 1.7e-05 0.15 12.1 5.4 1 11 581 591 581 592 0.96 17 18 0.31 2.8e+03 -1.5 18.4 4 18 622 636 620 637 0.93 18 18 1.7e-06 0.015 15.3 11.2 1 16 688 702 688 708 0.92
Sequence Information
- Coding Sequence
- ATGTTAGCTGCCCAAAAGCTGGTAGAGGCCTATGCCTCCAGCTCTGAGGATGAAGGGGAATTGGATGAGCAACATATTTTGGATCTGCTCTACAAACACTACCAGCCCACTTCGGACACTTCCATATCCCGCACAGCCACCTTTCTGGAGAACACTCTGCACTCGGGTGCAGCCACTTGCCTGATTTGCATAGGCAGCATACGACGCGTGGAGTCCATTTGGTCTTGTCAGTCTTGCTTTTGCTTCTTTCATTTAAACTGCATTCAGCGCTGGGCCAATGACAGTCTCTTGCAAATGAAGGTGAAGGCTGAACAGCAGCAAAATGGCCAACAGGGACACTACAACCACTTGGGTGAATTTGTGCCCGCAAAGCGACAAAAATCCTTACACTGGTGCTGCCCGCAGTGTCGTAAGGATTATCCACCCACGGAGCGTCCCACCAAATATGAATGTTTCTGTGGCAAGGAGGTGAATCCCTCGGCGCAGCCTTTTTTGGTGCCACATTCCTGCGGCGAAATATGTGGCAAGTTGCTGCAGCCCAAATGTGGTCATGATTGCAAACTTTTGTGTCATCCCGGTCCCTGTCCACCCTGTGCCCAGCAGGCGCAAATCTCTTGTCTGTGTGGCAAATCTCCTAAACTTCCCAGGCGCTGCATAGACAAGCAATGGCAGTGTTTGAGCAAGTGCCAACAACTATTGGCCTGTGGCAAACACAAATGTAATCAAAAATGTCATCGAGCGGGACAGTGTCCGCCCTGCACCAGTCAAAGTAGTCAGCCCTGCGAATGTGGGCGTGAGCAGAAGCTGGTCAATTGCTCCGATCGCAAGTGGAAGTGCCAGAATATTTGTGGAGCCTTATATGACTGTGGCCTGCACACATGCGAAAAGGTGTGCCATGCGGGTAACTGTGGCGGCGAAGAGTGTCCCTTGGGTGTACGCAGCTGTCCCTGTGGCAAGAATATTCAGGCTGGCGCCTGCACTGAAGCAGTGGAAACCTGTGGTGATACCTGCCAAAAGTTACTGTCTTGCGGTCTACACTCTTGCACCCAACGCTGCCATCGTGGAGCCTGCAATTTGTGCCCGGTCCGTACCAAAAAGAAATGTCGCTGCGGTTTGCATGAAAAAGAACTGCCCTGCTCCAAGGAATTCAATTGTGAAACCAAATGCAAACTACTCCGAGATTGTGGCAAACATGCCTGCAATCGCAAATGCTGCGGGGATCAGTGTCCGCCCTGTGAAAAGATTTGTGGCAAACAATTGAGTTGCAATAAGCATAAATGTCAATCTGTGTGCCACAATGGTCCCTGTTATCCCTGCAAAATGGAATCCCAGGTGAATTGTCGTTGCGGCAAAACAAGACGCAGTGTGCCCTGCGGTCGGGAGAGAAGTGCCAGAATTGTTTGCCTGGAGCTATGCCGTATTTCAGCCAAATGTCATCATGCCATTAAGCATCGCTGTCACAAAGGCGAATGTCCACCTTGCAGTCAGTTGTGTGGTTTACCCAATACAGGCAGCGGTTGTGGACACATATGCAAGGCTCGCTGTCATGAGGCTATAAGAGTAAACAAACCACATGAGGCCAGGCCACAGGCCAAAAAGTACGAATACAAATCCCTGCCACATCCACGCTGTGAGGAGGGCATCAGTGTCACTTGTATTGGCGGTCACGAGGTAGCCACCTGGCCCTGCTGGAACTCCAAACCCACCTCGTGTCAGCGTAAATGTGCACGAAAATTGAAATGTGGCAATCATCAGTGTTCCCTAGTCTGTCATGTTGTGCCCAATTTGACGGATATGCAACAACAAATTGGTTGTTCCAATTGCGAAGAAGGTTGTTCCATACCACGACCCACTGGCTGTGTGCATGCCTGTTCGAAAGGCTGTCATCCGCCACCCTGCAGTCCCTGCCATTTTGTATTGAAAACCAAATGTCATTGTGAACTCACCCAGGTGGTGTATAAATGCAGTGAATATTATGATGAAACGGGCACGGTGCAGGATATACTCGAGCGAAGAGAAAAACTACGCTGCTGCGGCAATCGTTGTTTGAAAAATTTCCCTTGCGGCCATCGCTGCCTGTCCATTTGCCATCCGGGCAAATGTCCCAATCCGGAATTGTGCCGCAAAAAGGTGCGCATATTTTGTTCTTGCAAGAGAATCAAACAGGAAGTAGCCTGTGACAAGCATCGAGCTGGTCAAACTCAACTTAATTGCGATTCCCTTTGTGAGTCGGAACGTACCAAAGCTGCAGCCGTCGAACTGGAGCAGCTAGAGCAAAAGCGCCGCTTGGAGGAGGAAAAGAATCGCTTGGAATTGGAGAAATTTCAACAAAAGTTTGCCAAACGCAAGCATAAAGAACGCAAAACTTTGGACATTGAACAGACCAAAAGGAAAATCAATTGGCAAAAAGGTGGCCATCTATACTGTTTCACTGTTGGCCATATTTGGTATGCAGAAAGTTAG
- Protein Sequence
- MLAAQKLVEAYASSSEDEGELDEQHILDLLYKHYQPTSDTSISRTATFLENTLHSGAATCLICIGSIRRVESIWSCQSCFCFFHLNCIQRWANDSLLQMKVKAEQQQNGQQGHYNHLGEFVPAKRQKSLHWCCPQCRKDYPPTERPTKYECFCGKEVNPSAQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQQAQISCLCGKSPKLPRRCIDKQWQCLSKCQQLLACGKHKCNQKCHRAGQCPPCTSQSSQPCECGREQKLVNCSDRKWKCQNICGALYDCGLHTCEKVCHAGNCGGEECPLGVRSCPCGKNIQAGACTEAVETCGDTCQKLLSCGLHSCTQRCHRGACNLCPVRTKKKCRCGLHEKELPCSKEFNCETKCKLLRDCGKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKMESQVNCRCGKTRRSVPCGRERSARIVCLELCRISAKCHHAIKHRCHKGECPPCSQLCGLPNTGSGCGHICKARCHEAIRVNKPHEARPQAKKYEYKSLPHPRCEEGISVTCIGGHEVATWPCWNSKPTSCQRKCARKLKCGNHQCSLVCHVVPNLTDMQQQIGCSNCEEGCSIPRPTGCVHACSKGCHPPPCSPCHFVLKTKCHCELTQVVYKCSEYYDETGTVQDILERREKLRCCGNRCLKNFPCGHRCLSICHPGKCPNPELCRKKVRIFCSCKRIKQEVACDKHRAGQTQLNCDSLCESERTKAAAVELEQLEQKRRLEEEKNRLELEKFQQKFAKRKHKERKTLDIEQTKRKINWQKGGHLYCFTVGHIWYAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00916869;
- 90% Identity
- -
- 80% Identity
- -