Lcol012609.1
Basic Information
- Insect
- Lordiphosa collinella
- Gene Symbol
- -
- Assembly
- GCA_018904265.1
- Location
- JAEIFV010000819.1:5826-9683[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.8 4.8e+02 1.8 2.5 3 17 62 76 61 77 0.88 2 13 0.0011 0.054 14.2 0.3 1 23 193 216 193 216 0.97 3 13 3.4e-05 0.0016 19.0 1.5 1 23 221 244 221 244 0.96 4 13 4.8e-05 0.0024 18.5 3.3 1 23 249 271 249 271 0.98 5 13 2.2 1.1e+02 3.8 7.1 2 23 278 299 277 299 0.94 6 13 0.005 0.24 12.1 2.0 3 23 310 331 309 331 0.93 7 13 0.0023 0.11 13.2 0.5 1 23 337 360 337 360 0.96 8 13 0.0022 0.11 13.3 0.2 2 23 371 393 370 393 0.95 9 13 0.00015 0.0074 16.9 0.2 1 23 422 444 422 444 0.97 10 13 6.3e-06 0.00031 21.3 2.5 1 23 451 473 451 473 0.97 11 13 3.7e-05 0.0018 18.9 0.2 2 23 480 501 480 501 0.97 12 13 0.0012 0.06 14.1 0.8 1 23 508 530 508 530 0.99 13 13 0.00023 0.011 16.3 3.7 1 23 536 559 536 559 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTCTTTGTGATTTCGAAAATGGCAACAACAACAATTTTGTGGACCTGTTTCATCCCACATGCTGGCAAAGTGAAATGGCCCAAATACGTGCGGAATTTGTAAATTGGAATCTAAAGATATCGCCAAACGATGGATTGCCTCAGAAAATCTGCAGTGATTGTTTCACCAAATTCTGTTCACTCTACACATTTCGCTTGGCCTGTCAGGAGGCTCAGGTGAAGCTAACGCATATTTATGATAAAATTGATGCCAGTAGCTTAGAGGAAACCGAAGAGGAAAGGGAGGAGGATGCCAGAACAGTAACACCTTTAATGGTTTCAGACGATCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCATGTGGAGGCCATTGACATCAATGATGCGAATGAATTTTCCCCAGAACTGACCATAAGCTATGCCTGTAAATTCTGCTTTAAGCCACAGGAAAGCTATCAATTGCAACAACTGCTGCTGGAGCATATCCAAACTGCCCACGATGCGGAGCAACCGTACAATTGTCCCGAATGCGATGCCTGTTTTCAGGACGCCGCCTCTCGCACCGTCCACCTGAAGAGTGTCCATGTGGAGAAGCAATTTGAGTGTGAGGTGTGCGGCAAGAAGTACGGCGATCGCAATAATCTGCGTCATCACGTGGAGAAATATCACACGGAAACGGACTTCGAGTGCAATCTGTGCGAGAAGCGTTTCTTTACGCGTAAGAGCCTGAAATATCACATGAAATGGCATAATCCGGAACGTCAGCTAAAGTGTCGCCACTGTGAACGTTTGTTCATCAATCAGCGTCATTTGAAATGCCACGAGGCCACCCATATGGGGCCAAGTGCCAGGAAGAGCGAACACTGTGCGGCCTGTGGCAAGGCATTTATACACCTAAAGACGCTGCGTTGGCACATCTACAGACAGCATGGCGGAGAGAAACCTTACAAATGTGCCCACTGCACTGAGGTTTTTGCCTCGTACGCGGAGAAAAGGATACACATGCTGGAGCTGCATATGGAGAATTTAACAGCCATAGAGCGTAGTGAGTGCATGTTATGTAGGCAACCCTTTACCACTGAGACGGACTTAATCGAGCATATGAGTCGGGAGCACTTGAATGTTCCAACGGCGGCCCCAGTGATAGCCAACAACAAGCGGGTGCTCCAAAAAAAGCGGGAGCGTCAGTATACGGGTCTGTTCCAGTGCGATAGCTGTCCACAGCGTTTCAATATGAAATCCGCCCTGGAGCGTCATGCGGCGGTGCATTCGGAAATCGACCGACCCCATGCCTGTCCCAACTGCTCCAAGCGTTTCAAGCGTGCCCAGGACATGAAGTGGCACATGAAAACTCATGAAAATGAAAAGCCCAATGTATGCGATGTGTGTGGCAAGGCGTTTGCCTTGAAGTATGTGCTTACGCAGCATCAAAGAAGTCACGAGGTGCTGGAGAAGAATTTCAAGTGCAGCGTATGCGGACGAGCGTATCTCTTTGAGAAATCCCTGCGTCTACATCAGCGTGTACACACGGGTCAGACCTACTACAAATGTGATCTCTGCCAGGAGCGGTTTGTCACCCACATCAAATTGAAAACTCACATGCAAAAGACTCATGCCCAGTCGCAGGCAAATGACTCTTCCCTGGATGATCTGATCAATATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAISMFLCDFENGNNNNFVDLFHPTCWQSEMAQIRAEFVNWNLKISPNDGLPQKICSDCFTKFCSLYTFRLACQEAQVKLTHIYDKIDASSLEETEEEREEDARTVTPLMVSDDQXXXXXXXXXXXXXXXXXXXHVEAIDINDANEFSPELTISYACKFCFKPQESYQLQQLLLEHIQTAHDAEQPYNCPECDACFQDAASRTVHLKSVHVEKQFECEVCGKKYGDRNNLRHHVEKYHTETDFECNLCEKRFFTRKSLKYHMKWHNPERQLKCRHCERLFINQRHLKCHEATHMGPSARKSEHCAACGKAFIHLKTLRWHIYRQHGGEKPYKCAHCTEVFASYAEKRIHMLELHMENLTAIERSECMLCRQPFTTETDLIEHMSREHLNVPTAAPVIANNKRVLQKKRERQYTGLFQCDSCPQRFNMKSALERHAAVHSEIDRPHACPNCSKRFKRAQDMKWHMKTHENEKPNVCDVCGKAFALKYVLTQHQRSHEVLEKNFKCSVCGRAYLFEKSLRLHQRVHTGQTYYKCDLCQERFVTHIKLKTHMQKTHAQSQANDSSLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919283;
- 90% Identity
- iTF_00919283; iTF_00920052; iTF_00915582; iTF_00914710; iTF_00917419; iTF_00918397;
- 80% Identity
- -