Lclr002627.1
Basic Information
- Insect
- Lordiphosa clarofinis
- Gene Symbol
- -
- Assembly
- GCA_018904275.1
- Location
- JAEIGQ010000156.1:704408-715019[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.6 4.4e+02 1.8 2.5 3 17 62 76 61 77 0.88 2 13 0.0081 0.41 11.3 0.4 1 23 196 219 196 219 0.96 3 13 3e-05 0.0015 19.0 1.5 1 23 224 247 224 247 0.96 4 13 4.2e-05 0.0021 18.5 3.3 1 23 252 274 252 274 0.98 5 13 1.9 98 3.8 7.1 2 23 281 302 280 302 0.94 6 13 0.0044 0.22 12.1 2.0 3 23 313 334 312 334 0.93 7 13 0.0023 0.12 13.0 0.7 1 23 340 363 340 363 0.96 8 13 0.00076 0.039 14.5 0.2 2 23 374 396 373 396 0.95 9 13 0.00023 0.012 16.2 0.3 1 23 425 447 425 447 0.96 10 13 5.5e-06 0.00028 21.3 2.5 1 23 454 476 454 476 0.97 11 13 3.2e-05 0.0016 18.8 0.2 2 23 483 504 483 504 0.97 12 13 0.0011 0.054 14.1 0.8 1 23 511 533 511 533 0.99 13 13 0.0002 0.01 16.3 3.7 1 23 539 562 539 562 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGCCGCACCTGTGCGATTTCCATGTTTGTTTGTGATTTCGAAAATGGCAACAACAACAATTTTGTGGACCTGTTCCATCCCACATGCTGGCAAAGCGAAATGGCCCAAATACGTACGGAATTTGTCAACTGGAATCTAAAGATATCGCCCAATGATGGATTGCCTCAGAAAATCTGCAGTGATTGTTTCACCAAATTCTGTTCCCTCTACACATTCCGCTTGGCCTGTCAGGAGGCTCAGGTGAAGCTATCGAATATTTATGATAAAATTGATGCCAGCAGTTTAGAGGAAACCGAAGACGAAAAGGATGAGGAGTCGGAGGAGGACACCAGAACAGCAACACCATTAATGGTTTCAGACGATCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATCCATGTGGAGGCCATTGACATCAATGAGACGAATGAATTTTCACCAGAACTGACCATAAGCTATGCCTGCAAATTCTGTTTCAAGCCACAGGAAAGCTATCAATTGCAACAGCTGCTGCTGGAGCATATCCAAACTGCCCATGATGCGGAGCAACCTTTTAATTGTCCCGAATGCGAAGCCTGTTTTCAGGATGCCGCCTCCCGTACCGTCCACCTGAAGAATGTTCATGTGGAGAAGCAATTCGAGTGTGAGGTGTGCGGCAAGAAGTACGGCGATCGCAATAATCTGCGTCATCATGTGGAGAAATATCACACCGAAACGGACTTTGAGTGCAATCTGTGCGAGAAGCGTTTCTTCACGCGCAAGAGTCTGAAATATCATATGAAATGGCACAACCCGGAACGCCAGCTAAAGTGTCGCCACTGTGAACGTTTGTTCATCAATCAGCGTCATTTGAAATGCCACGAGGCCACCCATATGGGGCCAAGTGCCAGGAAGAGCGAGCACTGTGCGGCCTGTGGAAAGGCATTCATACACCTCAAGACGCTGCGATGGCACATCTATCGACAGCACGGAGGAGAGAAACCGTACAAATGTGCCCACTGCACTGAGGTTTTTGCCTCCTACGCGGAGAAAAGGATACACATGCTGGAGCAGCATATGGAGAATCTAACAGCCATAGAGCGTAGTGAGTGCATGTTATGCAGGCAACCCTTTACCACTGAGAAAGACCTAATCGCGCATATGAGTCGGGAGCACTTGAAGGTACCAACGGCGGCACCTGTGATAGCCAATAACAAGCGGGTGCTTCAACAGAAACGGGAGCGTCGGTATACAGGTCTTTTCCAATGCGATAGCTGTCCACAACGTTTCAATATGAAATCCGCCCTGGAGCGTCATTCGGCGGTGCACTCGGAAATCGATCGTCCACATGCCTGTCCCAATTGCTCCAAGCGTTTCAAGCGTGCCCAGGACATGAAGTGGCACATGAAAACGCATGAGAATGAAAAGCCCAATGTATGCGATGTGTGCGGCAAGGCGTTTGCCTTGAAGTATGTGCTGACGCAGCACCAAAGAAGTCACGAGGTGCTCGAGAAGAATTTCAAGTGCAGCGTGTGCGGACGTGCCTATCTCTTTGAGAAATCCCTGCGTCTACATCAGCGCGTCCACACGGGTCAGACCTACTACAAATGTGATCTCTGCCAGGAGCGGTTTGTCACCCACATCAAATTGAAAACTCACATGCAAAAGACACACGCCCAATCGCAGGAAAAGGACTCGTCGCTGGATGATTTGATTAATATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAISMFVCDFENGNNNNFVDLFHPTCWQSEMAQIRTEFVNWNLKISPNDGLPQKICSDCFTKFCSLYTFRLACQEAQVKLSNIYDKIDASSLEETEDEKDEESEEDTRTATPLMVSDDQXXXXXXXXXXXXXXXXXIHVEAIDINETNEFSPELTISYACKFCFKPQESYQLQQLLLEHIQTAHDAEQPFNCPECEACFQDAASRTVHLKNVHVEKQFECEVCGKKYGDRNNLRHHVEKYHTETDFECNLCEKRFFTRKSLKYHMKWHNPERQLKCRHCERLFINQRHLKCHEATHMGPSARKSEHCAACGKAFIHLKTLRWHIYRQHGGEKPYKCAHCTEVFASYAEKRIHMLEQHMENLTAIERSECMLCRQPFTTEKDLIAHMSREHLKVPTAAPVIANNKRVLQQKRERRYTGLFQCDSCPQRFNMKSALERHSAVHSEIDRPHACPNCSKRFKRAQDMKWHMKTHENEKPNVCDVCGKAFALKYVLTQHQRSHEVLEKNFKCSVCGRAYLFEKSLRLHQRVHTGQTYYKCDLCQERFVTHIKLKTHMQKTHAQSQEKDSSLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00919283;
- 90% Identity
- iTF_00916510;
- 80% Identity
- -