Basic Information

Insect: Lordiphosa andalusiaca
Gene Symbol: RIM101
Assembly: GCA_035044965.1
Location: JAWNNM010003423.1:403215-409471[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.9 4.9e+02 1.8 2.5 3 17 62 76 61 77 0.88

2 13 0.0031 0.2 12.5 0.3 1 23 196 219 196 219 0.97

3 13 2.7e-05 0.0017 19.0 1.5 1 23 224 247 224 247 0.96

4 13 0.00055 0.034 14.8 2.5 1 23 252 274 252 274 0.98

5 13 1.8 1.1e+02 3.8 7.1 2 23 281 302 280 302 0.94

6 13 0.004 0.25 12.1 2.0 3 23 313 334 312 334 0.93

7 13 0.0023 0.14 12.9 0.8 1 23 340 363 340 363 0.96

8 13 0.00089 0.056 14.2 0.1 2 23 374 396 373 396 0.95

9 13 0.00012 0.0076 16.9 0.2 1 23 425 447 425 447 0.97

10 13 5e-06 0.00032 21.3 2.5 1 23 454 476 454 476 0.97

11 13 2.9e-05 0.0018 18.8 0.2 2 23 483 504 483 504 0.97

12 13 0.00097 0.061 14.1 0.8 1 23 511 533 511 533 0.99

13 13 0.00042 0.026 15.2 1.8 1 23 539 564 539 564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.9	4.9e+02	1.8	2.5	3	17	62	76	61	77	0.88
2	13	0.0031	0.2	12.5	0.3	1	23	196	219	196	219	0.97
3	13	2.7e-05	0.0017	19.0	1.5	1	23	224	247	224	247	0.96
4	13	0.00055	0.034	14.8	2.5	1	23	252	274	252	274	0.98
5	13	1.8	1.1e+02	3.8	7.1	2	23	281	302	280	302	0.94
6	13	0.004	0.25	12.1	2.0	3	23	313	334	312	334	0.93
7	13	0.0023	0.14	12.9	0.8	1	23	340	363	340	363	0.96
8	13	0.00089	0.056	14.2	0.1	2	23	374	396	373	396	0.95
9	13	0.00012	0.0076	16.9	0.2	1	23	425	447	425	447	0.97
10	13	5e-06	0.00032	21.3	2.5	1	23	454	476	454	476	0.97
11	13	2.9e-05	0.0018	18.8	0.2	2	23	483	504	483	504	0.97
12	13	0.00097	0.061	14.1	0.8	1	23	511	533	511	533	0.99
13	13	0.00042	0.026	15.2	1.8	1	23	539	564	539	564	0.97

Sequence Information

Coding Sequence: ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTTTGTGATTTCGAAaatggcagcaacaacaattttgtgGACCTGTTCCATCCCACATGCTGGCAAAGTGAAATGGCTCAAATACGTGCGGAATTTGTTAACTGGAATCTAAAGATATCGCCCAATGATGGATTGCCTCAGAAAATCTGCAGTGATTGTTTCACCAAATTCTGTTCACTCTACACATTTCGCTTGGCCTGTCAGGAGGCTCAGGTGAAGCTATCGCATATTTATGATAAAATTGATGCCAACAGTTTGGAGGAAACCGAAGAGGAAAGGGAGGAGGAGATGGAGGAGGATGCCAGAACAGTAACACCATTAACGGTTTCAGACGAACAACCAAACACTGCCACTGAtactgctgcttctgctgttCCCACTCCCATCGAGATCCATGTGGAGACCATTGACATCAATGAAGTGAATGAATTTTCACCAGAACTGACCATAAGCTATGCCTGTAAATTCTGTTTTAAGCCACAGGAAAGCTATCAACTGCAACAGCTACTGCTGGAGCATATCCAAACTGCCCACGATGCGGAGCAACCGTACAATTGTCCCGAATGCGAGGCCTGTTTTCAGGATGCCGCGTCTCGCACCGTCCACCTGAAGAGTGTTCATGTGGAGAAGCAATTCGAGTGTGAGGTGTGCGGCAAGAAGTACGGCGATCGCAACAATCTGCGTCATCACGTGGAGAAATATCACACGGAAACGGACTTCGAGTGCAATCTGTGCGAGAAGCGCTTTCTCACGCGCAAGAGTCTGAAATACCATATGAAGTGGCATAATCCGGAACGTCAGTTAAAGTGTCGTCACTGTGAACGTTTGTTCATCAACCAGCGTCATTTGAAATGCCACGAGGCCACCCATTTGGGGCCAAGTGCCAGGAAGAGTGAACACTGTGCGGCCTGTGGCAAGGCATTTATACACTTAAAGACGCTGCGTTGGCACATCTATAGACAGCATGGCGGAGAGAAACCTTACAAATGTGCCCACTGCACTGAGGTTTTTGCCTCCTACGCGGAGAAAAGGATACACATGCTGGAGCGGCATATGGAGAATCTAACAGCCATAGAGCGCAGTGAGTGCATGTTATGTAGGAAACCCTTTGCCACTGAGACGGACCTAATCGAGCATATGAGTCGGGAGCATTTGAAGGGACCAACGGCGGCACCGGTGATAGCCAACAACAAGCGCGTGCTCCAAAAAAAGCGAGAGCGTCAGTATACGGGTCTGTTCCAATGCGATAGTTGTCCACAGCGATTCAATATGAAATCCGCCCTGGAGCGTCATGCGGCGGTGCACTCGGAAATCGATCGACCACATGCCTGTCCGAACTGCTCCAAGCGATTCAAGCGTGCTCAGGACATGAAGTGGCACATGAAAACgcatgaaaatgaaaagccCAATGTGTGTGATGTGTGTGGCAAGGCGTTTGCGTTGAAGTATGTGCTTACGCAGCACCAAAGAAGTCACGAGGTCCTCGAGAAGAATTTCAAGTGCAGCGTATGCGGACGTGCGTATCTCTTTGAGAAATCCCTGCGTCTACATCAGCGTGTTCATACGGGTCAGACCTACTACAAGTGTGATCTGCCAGGGTGCCAGGAGCGGTTTGTCACCCAcatcaaattaaaaaCTCACATGCAAAAGACGCATGCACAGTCGCAGGCAAATGACTCTAGCCTGGATGATCTTATCAATATTGTGattacttaa
Protein Sequence: METCRTCAISMFVCDFENGSNNNFVDLFHPTCWQSEMAQIRAEFVNWNLKISPNDGLPQKICSDCFTKFCSLYTFRLACQEAQVKLSHIYDKIDANSLEETEEEREEEMEEDARTVTPLTVSDEQPNTATDTAASAVPTPIEIHVETIDINEVNEFSPELTISYACKFCFKPQESYQLQQLLLEHIQTAHDAEQPYNCPECEACFQDAASRTVHLKSVHVEKQFECEVCGKKYGDRNNLRHHVEKYHTETDFECNLCEKRFLTRKSLKYHMKWHNPERQLKCRHCERLFINQRHLKCHEATHLGPSARKSEHCAACGKAFIHLKTLRWHIYRQHGGEKPYKCAHCTEVFASYAEKRIHMLERHMENLTAIERSECMLCRKPFATETDLIEHMSREHLKGPTAAPVIANNKRVLQKKRERQYTGLFQCDSCPQRFNMKSALERHAAVHSEIDRPHACPNCSKRFKRAQDMKWHMKTHENEKPNVCDVCGKAFALKYVLTQHQRSHEVLEKNFKCSVCGRAYLFEKSLRLHQRVHTGQTYYKCDLPGCQERFVTHIKLKTHMQKTHAQSQANDSSLDDLINIVIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919283;
90% Identity: iTF_00916510;
80% Identity: -