Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010000341.1:1-12822[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.4 3.2e+02 1.9 2.5 3 17 12 26 11 27 0.88

2 13 0.0069 0.3 11.4 0.4 1 23 146 169 146 169 0.96

3 13 6.5e-05 0.0028 17.8 1.2 1 23 174 197 174 197 0.96

4 13 0.00052 0.022 15.0 2.5 1 23 202 224 202 224 0.98

5 13 1.7 72 4.0 7.1 2 23 231 252 230 252 0.94

6 13 0.0038 0.16 12.3 2.0 3 23 263 284 262 284 0.93

7 13 0.002 0.086 13.2 0.7 1 23 290 313 290 313 0.96

8 13 0.00065 0.028 14.7 0.2 2 23 324 346 323 346 0.95

9 13 0.0002 0.0085 16.3 0.3 1 23 375 397 375 397 0.96

10 13 4.7e-06 0.00021 21.4 2.5 1 23 404 426 404 426 0.97

11 13 2.8e-05 0.0012 19.0 0.2 2 23 433 454 433 454 0.97

12 13 0.00053 0.023 15.0 1.3 1 23 461 483 461 483 0.99

13 13 0.00017 0.0075 16.5 3.7 1 23 489 512 489 512 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.4	3.2e+02	1.9	2.5	3	17	12	26	11	27	0.88
2	13	0.0069	0.3	11.4	0.4	1	23	146	169	146	169	0.96
3	13	6.5e-05	0.0028	17.8	1.2	1	23	174	197	174	197	0.96
4	13	0.00052	0.022	15.0	2.5	1	23	202	224	202	224	0.98
5	13	1.7	72	4.0	7.1	2	23	231	252	230	252	0.94
6	13	0.0038	0.16	12.3	2.0	3	23	263	284	262	284	0.93
7	13	0.002	0.086	13.2	0.7	1	23	290	313	290	313	0.96
8	13	0.00065	0.028	14.7	0.2	2	23	324	346	323	346	0.95
9	13	0.0002	0.0085	16.3	0.3	1	23	375	397	375	397	0.96
10	13	4.7e-06	0.00021	21.4	2.5	1	23	404	426	404	426	0.97
11	13	2.8e-05	0.0012	19.0	0.2	2	23	433	454	433	454	0.97
12	13	0.00053	0.023	15.0	1.3	1	23	461	483	461	483	0.99
13	13	0.00017	0.0075	16.5	3.7	1	23	489	512	489	512	0.98

Sequence Information

Coding Sequence: ATATCGCCCAATGATGGATTGCCTCAGAAGATCTGCAGTGATTGTTTCACCAAATTCTGTTCCCTCTACACATTTCGCTTGGCCTGTCAGGAGGCTCAGGTGAAGCTATCGAATATTTATGATAAAATTGATGCCAGCAGTTTAGAGGAAACCGAAGACGAAAAGGATGAGGAGACGGAGGAGGATGCCAGAACAGCAACACCATTAATGGTTTCAGACGATCAACCGAACACTGCCACTGATACTGCTGCTTCTGCTACTGCTACTCCCATTGAGATCCATGTGGAGGCCATTGACATCAATGAAACGAATGAATTTTCACCAGAACTGACCATACGCTATGCCTGCAAATTTTGCTTTAAGCCACAGGAAAGCTATCAATTGCAACAGCTGCTGCTGGAGCATATCCAAACTGCCCATGATGCCGAGCAACCTTTTAATTGTCCCGAATGCGAAGCCTGTTTTCAGGATGCCGCCTCCCGTACCGTCCACCTGAAGAATGTTCATGTGGAGAAGCAATTCGAGTGTGCGGTGTGCGGCAAGAAGTACGGCGATCGCAACAATCTGCGCCATCATGTGGAGAAATATCATACCGAAACGGACTTTGAGTGCAATCTGTGCGAGAAGCGTTTCCTCACGCGCAAGAGTCTGAAATATCATATGAAATGGCACAACCCGGAGCGCCAGCTAAAGTGTCGCCACTGTGAACGTTTGTTCATCAATCAGCGTCATTTGAAATGCCACGAGGCCACCCATATGGGACCAAGTGCCAGGAAGAGCGAGCACTGTGCGGCCTGTGGAAAGGCATTTATACACCTCAAGACGCTGCGGTGGCACATCTATCGACAGCATGGAGGAGAGAAACCGTACAAATGTGCCCACTGCACTGAGGTTTTTGCCTCCTACGCGGAGAAAAGGATACACATGCTGGAGCAGCATATGGAGAATCTAACAGCCATAGAGCGTAGTGAGTGCATGTTATGCAGGCAACCCTTTACCACTGAGAAGGACCTAATCGCGCATATGAGTCGGGAGCACTTGAAGGTACCCACGGCAGCACCAGTGATAGCCAATAACAAGCGGGTGCTCCAACAGAAGCGAGAGCGTCGGTATACGGGTCTTTTCCAATGCGATAGCTGTCCACAACGTTTCAATATGAAATCCGCCCTGGAGCGTCACTCGGCGGTGCACTCGGAAATCGATCGTCCTCATGCCTGTCCCAATTGCTCCAAGCGTTTCAAGCGTGCCCAGGACATGAAGTGGCACATGAAAACGCATGAGAATGAAAAGCCCAATGTATGCGATGTGTGTGGCAAGGCGTTTGCCTTGAAGTATGTGCTGACGCAGCACCAAAGAAGTCACGAGGTGCTCGAGAAGAATTTCAAGTGCAGCGTGTGCGGACGTTCGTATCTCTTTGAGAAATCCCTGCGTCTACATCAGCGTGTCCACACGGGTCAGACCTACTACAAATGTGATCTCTGCCAGGAGCGGTTTGTCACCCACATCAAATTGAAAACTCACATGCAAAAGACACATGCCCAATCGCAGGAAAAGGACTCGTCGCTGGATGATCTGATTAATATTGTGATTTCCTAA
Protein Sequence: ISPNDGLPQKICSDCFTKFCSLYTFRLACQEAQVKLSNIYDKIDASSLEETEDEKDEETEEDARTATPLMVSDDQPNTATDTAASATATPIEIHVEAIDINETNEFSPELTIRYACKFCFKPQESYQLQQLLLEHIQTAHDAEQPFNCPECEACFQDAASRTVHLKNVHVEKQFECAVCGKKYGDRNNLRHHVEKYHTETDFECNLCEKRFLTRKSLKYHMKWHNPERQLKCRHCERLFINQRHLKCHEATHMGPSARKSEHCAACGKAFIHLKTLRWHIYRQHGGEKPYKCAHCTEVFASYAEKRIHMLEQHMENLTAIERSECMLCRQPFTTEKDLIAHMSREHLKVPTAAPVIANNKRVLQQKRERRYTGLFQCDSCPQRFNMKSALERHSAVHSEIDRPHACPNCSKRFKRAQDMKWHMKTHENEKPNVCDVCGKAFALKYVLTQHQRSHEVLEKNFKCSVCGRSYLFEKSLRLHQRVHTGQTYYKCDLCQERFVTHIKLKTHMQKTHAQSQEKDSSLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00919283;
90% Identity: iTF_00916510;
80% Identity: -