Basic Information

Insect: Lordiphosa clarofinis
Gene Symbol: -
Assembly: GCA_018904275.1
Location: JAEIGQ010000019.1:503129-523925[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00032 0.016 15.7 3.4 1 23 290 312 290 312 0.98

2 10 0.0015 0.079 13.6 10.5 1 23 319 341 319 341 0.96

3 10 0.00016 0.0079 16.7 6.5 1 23 347 369 347 369 0.98

4 10 0.00071 0.036 14.6 1.6 1 23 375 397 375 397 0.95

5 10 3.4e-05 0.0017 18.8 0.5 1 23 403 425 403 425 0.97

6 10 3.3e-05 0.0017 18.8 0.1 1 23 431 453 431 453 0.98

7 10 0.00019 0.0097 16.4 2.0 1 23 458 481 458 481 0.97

8 10 0.08 4.1 8.2 0.3 1 23 487 510 487 510 0.94

9 10 0.00026 0.013 16.0 0.1 1 23 572 594 572 594 0.98

10 10 0.0068 0.35 11.5 4.9 5 23 689 707 681 707 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00032	0.016	15.7	3.4	1	23	290	312	290	312	0.98
2	10	0.0015	0.079	13.6	10.5	1	23	319	341	319	341	0.96
3	10	0.00016	0.0079	16.7	6.5	1	23	347	369	347	369	0.98
4	10	0.00071	0.036	14.6	1.6	1	23	375	397	375	397	0.95
5	10	3.4e-05	0.0017	18.8	0.5	1	23	403	425	403	425	0.97
6	10	3.3e-05	0.0017	18.8	0.1	1	23	431	453	431	453	0.98
7	10	0.00019	0.0097	16.4	2.0	1	23	458	481	458	481	0.97
8	10	0.08	4.1	8.2	0.3	1	23	487	510	487	510	0.94
9	10	0.00026	0.013	16.0	0.1	1	23	572	594	572	594	0.98
10	10	0.0068	0.35	11.5	4.9	5	23	689	707	681	707	0.92

Sequence Information

Coding Sequence: ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTTGGCTACACCTGGGGCTTTGCAGACAACGTCAGCCGTACCGCTGAATCGGTATTGGAAATATCGCCAAATATTAATTACACCGTCAGTGGGGAATCGATGCCCTATCTGTTATCCACGGATGGAACATTGGCTGTACAAAAGGATGTTAAAGGTGCTCTTGCCGGCAATAAGGGAAATGTGGTGCGTCGCATGTTCGTGGTGAACGATTCCTCGTTTCCGCCTGGGACACAAAGAGTAATTACCACAGGTGGCACTTCAACGGTGGTCAAAAAACAGGACTCCACTCAACAGGTGTTGAGCATAAATTCACTTGATAAGAACTATCTCTTGGTCGATCAGGCCACAGCCGCAGCTGCAGCAGCCGCCGCTGCCGGCGATCCGGCGGCTGCCCATCATCATACCTTGACGAATGGCAGTCTAGTTGATGCCAAAACCGGACAAACCGTATTGACCACGGGAGCAGCTGCTGCTGCCGCTGCCAAATCCCATTTCGGCTCAATTGGTGCACTGCATCTGACGCAAGAGGAGTGCAACGAGATCTTAATCAAGCGGGCCATCGCTGCCGGCCACCATCAGACGCACACACTGACCACAGCCGGCGACGGGTCGCATCACCATAGCACGGGGCCGGGCGCAACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATTCAAGGACTTGAAGAGAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACTTTAGAGTTGTCCCCCAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACGATTAAAAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAATCCTTTCTGCTCAAGCATCATTTGACCACGCACGCCCGCGTCCACACAGGTGGTGAACGTCCACATATCTGCACCCATTGCGGCAAGAGTTTCGCCCACAAGCATTGCCTGAACACCCATCTGCTGCTCCATTCGACGGATCGTCCGTATCAGTGCCAGGAGTGCAAAAAGAGCTTCACCCTCAAGCATCATCTGTTGACGCACTCGCGAGTCCATAGCCGGGATCGGCCCTTTGTGTGCCAGGAGTGCGGACGGGCATTTCCGCTCAAACGTCACCTGGTTACGCACAGTAAATTCCACGCCGGCGAACGTCCCTACGTCTGCGAGGAATGCGGTGAGAGTTTTGCCCAGGAGAATCATCTGATTATGCACTCGCGCTTTCACGGATCCCTGAATCCCTTTGTTTGTGCTGAGTGCGGAGCCTCGTTTCCACGTAAATTCCAATTGGTAAATCACGGACGTATCCACGGCAAGATTCCACATTCGTGCACCGTTTGCGGCAAGGAATTTCTACAGAAGCGCACCCTAGTTTCCCACATGAGGCGTGTACATACCGGCGAGCAGGCTCATCCCTGCGTCAGCTGTGGCGAGGGTTTCCTCACCAAGGCTGAGCTGCATCAGCATGTTCGTGCTGCTCACAATGGAGTCAATCCCAATACAAGCAGCGCCACCATCATAGCCAATCAACAGCAGCTACAACAGGCCCATCATCACCCCGGACCGCCGTCACATCCGCAGACCATTACCGTGGTGAGCAATCCGGCCAATTCGACCCTGCTGACGGTGTCCACCACAGATGCCAATGGGGTGGCACGTCCTCAGTTTGTTTGCCGCGAGTGCGGCAGCGCCTTCAACAGCCGCGAGGCCCTGGCCCTGCACTTGCGTCTGCACACGGGCGACAAGAGCCTGATGACCGATCTGTGCGCCCTGACAGCAGCGCTGCCCGGCCACTTCTTAAGCACGGCCAGCCTAAATCCGGGCACTGTCGTCACCGCCAATCCCAATCTGGTGGGCCAGAGTCCGGTGCCTGTGCAAATTATATCGTCCACCGGGCAGGTGATGTCACAGACCACCCTGGTGCAGGCCGCCAACTCCACACATCCGCAAGCCGTTGTCACCGCCCACAATCGTCGGCATCCCAATGGCGGTTGCACGGTACGCACCCATGTCTGTGAGTGTGGCAAGGCCTTCTTCCAGAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCGCAGCAACAGGAGGCCAACTCGGCAGCAACTGGACAGCCACAACAACAACAACAGCAGCAGCAGGCATCCACACAACAGGTTCAGGTGCAAATAATGCCCGATGAAATGGACGCGAATCCCAATCATCGTTATCAACCGGACGGGGATATGTAA
Protein Sequence: MCAAQSNPPPFGYTWGFADNVSRTAESVLEISPNINYTVSGESMPYLLSTDGTLAVQKDVKGALAGNKGNVVRRMFVVNDSSFPPGTQRVITTGGTSTVVKKQDSTQQVLSINSLDKNYLLVDQATAAAAAAAAAGDPAAAHHHTLTNGSLVDAKTGQTVLTTGAAAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTLTTAGDGSHHHSTGPGATPSDILPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQAHHHPGPPSHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQEANSAATGQPQQQQQQQQASTQQVQVQIMPDEMDANPNHRYQPDGDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481685;
90% Identity: iTF_00503428; iTF_00920042; iTF_00917435; iTF_00919328;
80% Identity: -