Basic Information

Insect: Drosophila equinoxialis
Gene Symbol: -
Assembly: GCA_018150345.1
Location: JAECWI010000001.1:4643300-4649774[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00018 0.015 15.8 3.4 1 23 294 316 294 316 0.98

2 10 0.00091 0.072 13.7 10.5 1 23 323 345 323 345 0.96

3 10 9.1e-05 0.0073 16.8 6.5 1 23 351 373 351 373 0.98

4 10 0.00028 0.022 15.3 2.3 1 23 379 401 379 401 0.95

5 10 2e-05 0.0016 18.9 0.5 1 23 407 429 407 429 0.97

6 10 6.6e-06 0.00053 20.4 0.1 1 23 435 457 435 457 0.98

7 10 6.3e-05 0.005 17.3 2.0 1 23 462 485 462 485 0.97

8 10 0.00071 0.057 14.0 0.2 1 23 491 514 491 514 0.94

9 10 0.00015 0.012 16.1 0.1 1 23 568 590 568 590 0.98

10 10 0.004 0.32 11.6 4.9 5 23 680 698 672 698 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00018	0.015	15.8	3.4	1	23	294	316	294	316	0.98
2	10	0.00091	0.072	13.7	10.5	1	23	323	345	323	345	0.96
3	10	9.1e-05	0.0073	16.8	6.5	1	23	351	373	351	373	0.98
4	10	0.00028	0.022	15.3	2.3	1	23	379	401	379	401	0.95
5	10	2e-05	0.0016	18.9	0.5	1	23	407	429	407	429	0.97
6	10	6.6e-06	0.00053	20.4	0.1	1	23	435	457	435	457	0.98
7	10	6.3e-05	0.005	17.3	2.0	1	23	462	485	462	485	0.97
8	10	0.00071	0.057	14.0	0.2	1	23	491	514	491	514	0.94
9	10	0.00015	0.012	16.1	0.1	1	23	568	590	568	590	0.98
10	10	0.004	0.32	11.6	4.9	5	23	680	698	672	698	0.92

Sequence Information

Coding Sequence: ATGTGCGCTGCACAGAGCAATCCGCCGCCCTTTGGCTACACTTGGGGCTTTGCAGACAACGGCAGCCGTACCGCCGAATCGGTATTGGAAATATCGCCAAATATTAATTACACCGTTAGTGGGGAATCGATGCCCTATCTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTGGCTGGCAATAAGGCGAATGTTGTGCGTCGCATGTTCTTGGTGAACGATTCCTCATTTCCGCACGGTACACAAAGAGTAATTACCACAGGTGCCACCTCGTCGGTGGTGAAGAAACAGGACCCAACCACTCAACAGGTGTTGAGTATAAATTCACTCGATAAGAACTATCTTCTGGTCGATCAGGCCACAGCCGCAGCTGCAGCAGCTGCCGGTGATCCAACGGCTCATCATCATACTTTGACGAATGGTAGCATTGTTGATGCCAAAACAGGACAAACCGTTTTGAGTTCGGGGGCCGCAGCTGCTGCTGCTGCTAAATCCCATTTCGGTTCCATTGGTGCACTGCATCTAACGCAAGAGGAGTGCAATGAGATATTGATAAAGCGTGCCATCGCTGCCGGCCACCATCAGACGCACACAATCACCACCACCGCCGACGGAGCGCATCATCATAGCACGGCGCCAGGCGCGACACCAAGTAAGCATCTCTCAAACTCAAAAAACCTATCTGTCTCGCCCCTTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACTATCAAGAAGGAACGCCCGTACAGTTGTGACGAGTGCGGCAAGTCCTTTCTGCTCAAGCATCATTTGACCACACACGCCCGCGTCCACACAGGTGGTGAACGTCCACATATCTGCACCCATTGCGGTAAAAGTTTTGCCCACAAACATTGCCTAAATACCCATCTGCTGTTGCATTCAACGGATCGCCCATATCAGTGCCAGGAGTGCAAGAAAAGTTTTACCCTTAAGCATCATCTGTTGACGCATTCACGTGTCCATAGCCGGGAACGGCCATTTGTGTGCCAGGAGTGTGGACGCTCATTTCCATTAAAGCGTCACCTGGTCACTCATAGTAAATTTCACGCAGGCGAACGTCCATACGTCTGTGAGGAATGCGGTGAGAGTTTTGCCCAGGAGAATCATCTGATTATGCACTCGCGCTTTCACGGGTCCTTGAATCCATTTGTTTGCTCTGAGTGCGGTGCCTCGTTTCCACGTAAATTTCAATTGGTTAATCACGGACGTATACACGGCAAGATACCACATTCGTGTACAATTTGTGGTAAAGAATTTCTACAGAAGCGCACATTAGTTTCCCACATGAGGCGCGTACATACGGGCGAGCAGGCGCATCCCTGCGTGAGTTGTGGCGAGGGTTTCCCCACAAAGGCCGAACTGCATCAGCATGTTCGTGCCGCTCACAATGGCGTTAATCCCAATACAAGTAGCGCCACCATAATAGCTAATCAACAGCAGCTACAGCAGCCTCACCATCACCCCGGGCATCCGCAGACCATAACTGTTGTCAGTAATCCGGTAACAGTGTCCATAACCGATGCCAATGGTGTGGCAAGACCGCAATTTGTTTGCCGTGAGTGCGGCAGCGCCTTTAATAGCCGCGAAGCATTGGCCCTCCATTTGCGTCTGCATACTGGCGATAAGAGCCTAATGACCGATTTGTGCGCCCTGACGGCAGCTATACCAGGACATTTCCTGAGCACGGCAAGTCTTAATCCAGGCACTGTGGTAGCAGCCAATCCCAATTTGGTTGGACAGAGTCCGGTGCCAGTGCAAATTATTTCGTCCACCGGCCAGTTAATGTCACAAACCACGCTGGTGCAGGCCGCCAATTCGACCCATCCGCAGCATAATCGGCGACATCCCAACGGCGGTTGCACGGTCCGCACCCATGTCTGTGAGTGTGGCAAGGCATTCTTCCAGAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCACAGCAACAGGTAGGCTAG
Protein Sequence: MCAAQSNPPPFGYTWGFADNGSRTAESVLEISPNINYTVSGESMPYLLSTDGSLAVQKDVKGALAGNKANVVRRMFLVNDSSFPHGTQRVITTGATSSVVKKQDPTTQQVLSINSLDKNYLLVDQATAAAAAAAGDPTAHHHTLTNGSIVDAKTGQTVLSSGAAAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTITTTADGAHHHSTAPGATPSKHLSNSKNLSVSPLQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCSECGASFPRKFQLVNHGRIHGKIPHSCTICGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFPTKAELHQHVRAAHNGVNPNTSSATIIANQQQLQQPHHHPGHPQTITVVSNPVTVSITDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAAIPGHFLSTASLNPGTVVAANPNLVGQSPVPVQIISSTGQLMSQTTLVQAANSTHPQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01556276;
90% Identity: iTF_00915601;
80% Identity: -