Basic Information

Insect: Lordiphosa stackelbergi
Gene Symbol: -
Assembly: GCA_018904235.1
Location: JAEIFU010002768.1:30907-36827[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00027 0.012 15.9 3.4 1 23 247 269 247 269 0.98

2 11 0.0013 0.058 13.7 10.5 1 23 276 298 276 298 0.96

3 11 0.00013 0.0058 16.8 6.5 1 23 304 326 304 326 0.98

4 11 0.00061 0.026 14.8 1.6 1 23 332 354 332 354 0.95

5 11 2.9e-05 0.0013 18.9 0.5 1 23 360 382 360 382 0.97

6 11 2.8e-05 0.0012 19.0 0.1 1 23 388 410 388 410 0.98

7 11 0.00016 0.0071 16.6 2.0 1 23 415 438 415 438 0.97

8 11 0.069 3 8.3 0.3 1 23 444 467 444 467 0.94

9 11 0.00022 0.0096 16.2 0.1 1 23 533 555 533 555 0.98

10 11 0.014 0.59 10.5 0.2 5 23 636 654 634 654 0.95

11 11 0.0059 0.25 11.7 4.9 5 23 667 685 659 685 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00027	0.012	15.9	3.4	1	23	247	269	247	269	0.98
2	11	0.0013	0.058	13.7	10.5	1	23	276	298	276	298	0.96
3	11	0.00013	0.0058	16.8	6.5	1	23	304	326	304	326	0.98
4	11	0.00061	0.026	14.8	1.6	1	23	332	354	332	354	0.95
5	11	2.9e-05	0.0013	18.9	0.5	1	23	360	382	360	382	0.97
6	11	2.8e-05	0.0012	19.0	0.1	1	23	388	410	388	410	0.98
7	11	0.00016	0.0071	16.6	2.0	1	23	415	438	415	438	0.97
8	11	0.069	3	8.3	0.3	1	23	444	467	444	467	0.94
9	11	0.00022	0.0096	16.2	0.1	1	23	533	555	533	555	0.98
10	11	0.014	0.59	10.5	0.2	5	23	636	654	634	654	0.95
11	11	0.0059	0.25	11.7	4.9	5	23	667	685	659	685	0.92

Sequence Information

Coding Sequence: ATGCCCTATCTGTTATCCACGGATGGAACATTGGCCGTACAAAAGGATGTTAAAGGTGCACTCGCCGGCAATAAGGGAAATGTGGTGCGTCGCATGTTCGTGGTGAACGATTCCTCGTTTCCGCCTGGGACACAAAGAGTAATTACCACAGGTGGCACTTCAACGGTGGTCAAGAAACAGGACTCCACTCAACAGGTGTTGAGCATAAATTCACTTGATAAGAACTATCTCTTGGTCGATCAGGCCACAGCCGCAGCTGCAGCAGCCGCCGCTGCCGGCGATCCGGCGGCTGCCCATCATCATACCTTGACGAATGGCAGTCTAGTTGATGCCAAAACCGGACAAACCGTATTGACCACGGGAGCAGCTGCTGCTGCCGCTGCCAAATCCCATTTCGGCTCAATTGGTGCACTGCATCTCACGCAAGAGGAGTGCAACGAGATCTTAATCAAGCGGGCCATCGCTGCCGGCCACCATCAGACGCACACACTCACCACAGCCGGCGACGGGTCGCATCACCATAGCACGGGGCCGGGCGCAACACCAAGTGACATACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATTCAAGGACTTGAAGAGAACGAGGACTCACAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACTTTAGAGTTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACGGACGCCACGATTAAAAAGGAACGCCCGTACAGTTGCGACGAGTGCGGCAAATCCTTTCTGCTCAAGCATCATTTGACCACGCACGCCCGCGTCCACACAGGTGGTGAACGTCCACATATCTGCACCCATTGCGGCAAGAGTTTCGCCCACAAGCATTGCCTGAACACCCATCTGCTGCTCCATTCAACGGATCGTCCGTATCAGTGCCAGGAGTGCAAAAAGAGCTTCACCCTCAAGCATCATCTGTTGACGCACTCGCGTGTCCATAGCCGGGATCGGCCTTTTGTGTGCCAGGAGTGCGGACGGGCATTTCCCCTCAAGCGTCACCTGGTTACGCACAGTAAATTCCACGCCGGCGAACGTCCCTACGTCTGCGAGGAATGCGGTGAGAGTTTTGCCCAGGAGAATCATCTGATTATGCACTCGCGCTTTCACGGATCCTTGAATCCCTTTGTCTGTGCTGAGTGCGGAGCCTCGTTTCCACGTAAATTCCAATTGGTAAATCACGGACGTATCCACGGCAAGATTCCACATTCGTGCACCGTTTGCGGCAAGGAATTTCTACAGAAGCGCACCCTAGTTTCCCACATGAGGCGTGTACATACCGGCGAGCAGGCTCATCCCTGCGTGAGCTGTGGCGAGGGTTTCCTCACCAAGGCTGAGCTGCATCAGCATGTTCGTGCCGCTCACAATGGAGTTAATCCCAATACAAGCAGCGCCACCATCATAGCCAATCAACAGTTGTTTTTTAAGCAGCTACAACAGGCTCATCATCACCCCGGACCGCCGTCACATCCGCAGACCATTACTGTGGTGAGCAATCCGGCCAATTCGACACTGTTGACGGTCTCCACAACCGATGCCAATGGCGTGGCACGTCCGCAGTTTGTTTGCCGCGAGTGTGGCAGCGCCTTCAATAGCCGCGAGGCTCTGGCCCTGCACTTGCGTCTGCACACGGGCGACAAGAGCCTGATGACCGACCTGTGCGCCCTGACAGCAGCGCTGCCCGGGCACTTTTTAAGCACGGCCAGCCTAAATCCGGGCACTGTCGTCACCGCCAATCCCAATCTGGTGGGCCAGAGTCCGGTGCCTGTGCAAATAATATCGTCCACCGGGCAGGTGATGTCACAGACCACCCTGGTGCAGGCCGCCAATTCCACACATCCGCAAGCAGTTGTCACCGCCGTGCCCACCATCTGCGGCAAGGGATTCGCCGCCAAGCACGGCCTCATGCAGCACAATCGCCGGCATCCCAATGGCGGATGCACGGTACGCACCCATGTCTGTGAGTGTGGCAAGGCCTTCTTCCAGAAGAATCATCTGATGCTGCATCAGCGCCAGCATTTGGAAACAAAGCCAGCCATATCGCAGCAACAGGTATGCTAA
Protein Sequence: MPYLLSTDGTLAVQKDVKGALAGNKGNVVRRMFVVNDSSFPPGTQRVITTGGTSTVVKKQDSTQQVLSINSLDKNYLLVDQATAAAAAAAAAGDPAAAHHHTLTNGSLVDAKTGQTVLTTGAAAAAAAKSHFGSIGALHLTQEECNEILIKRAIAAGHHQTHTLTTAGDGSHHHSTGPGATPSDILPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRAFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCAECGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQLFFKQLQQAHHHPGPPSHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVGQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPTICGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00481685;
90% Identity: iTF_00915601;
80% Identity: -