Lclr010702.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa clarofinis
Gene Symbol
-
Assembly
GCA_018904275.1
Location
JAEIGQ010000002.1:6437870-6451461[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.4e-05 0.0012 19.3 2.1 1 23 158 180 158 180 0.97
2 18 7.9e-06 0.0004 20.8 0.4 1 23 186 208 186 208 0.97
3 18 0.0012 0.059 13.9 0.9 1 23 214 236 214 236 0.95
4 18 1.7e-05 0.00085 19.7 3.1 1 23 242 264 242 264 0.97
5 18 3.8e-05 0.0019 18.6 4.7 1 23 270 292 270 292 0.99
6 18 6.9e-05 0.0035 17.8 5.7 1 23 298 320 298 320 0.97
7 18 3.4e-07 1.7e-05 25.1 4.3 1 23 326 348 326 348 0.98
8 18 1.2e-07 6.2e-06 26.5 2.4 1 23 354 376 354 376 0.97
9 18 7.1e-05 0.0036 17.8 6.7 1 23 383 405 383 405 0.97
10 18 0.00012 0.0063 17.0 6.5 1 23 411 433 411 433 0.98
11 18 1.1e-05 0.00056 20.3 4.5 1 23 439 461 439 461 0.98
12 18 8e-06 0.00041 20.8 8.1 1 23 467 489 467 489 0.98
13 18 6.5e-06 0.00033 21.0 7.6 1 23 495 517 495 517 0.97
14 18 7.3e-07 3.7e-05 24.0 7.7 1 23 523 545 523 545 0.98
15 18 0.00023 0.012 16.2 9.5 1 23 551 574 551 574 0.95
16 18 8.1e-05 0.0041 17.6 0.9 1 23 580 602 580 602 0.98
17 18 0.00088 0.045 14.3 3.4 1 23 612 634 612 634 0.97
18 18 1e-05 0.00051 20.4 1.6 1 23 640 663 640 663 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGTTCGGTTCCCTCGGTGGTCACACCGGTGGTAACTACTGGTGGTGGCACCACAATAACATTGGGCGGTGGCCCACCACCCTCATCCCTGCCCAAATCAGAGATCAAAGAGGATGGCAAACCGCCTCATGGCATTGAAATGTATAAAGTGAACATTGAAGATATCTCCCAGCTGTTCACCTATCACGAAGTCTTTGGCAAAATCCATGGGGATGTGGTGAATCATCAATTGGCGGCGGCGGCACATGTCACAACGACCACGACCAGCTCCTCCACGGCCAGCAGTAGTGCAGGGAGTGCGGGGGCAGGCACAACGACAACCTCAACGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATACACGGCGTGGACGCTGGCGGAGGCAACGGCGGCCAATCATCCCAGGTGACCCTGGCACCCGATGGCACGCCCATTGCCACTGGGACACATGTCTGCGATATTTGTGGGAAAATGTTCCAGTTTCGCTATCAGCTAATTGTCCACCGTCGCTATCACAGCGAACGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGGTTTACCACCTCGCAGGATCTGACGCGGCATGGCAAAATCCACATTGGCGGTCCCATGTTCACCTGCATCGTGTGCTTCAATGTGTTCGCCAACAACACCAGCCTGGAACGGCACATGAAACGTCACTCCACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACATTTGCCCGCAAAGAGCATCTGGACAATCATTTTCGTTCGCATACGGGTGAAACGCCATTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCATATGGTTAATCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCATCTAGCCAATCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCATACGGGCGAATCACCGCATCGCTGCTCCTACTGCATGAAGACGTTCACACGCAAGGAGCATCTGGTTAATCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACACGCAAGGAGCACTTGACGAATCATGTGCGCCAGCACACGGGCGACTCGCCGCACCGCTGCTCGTACTGCAAGAAGACGTTCACCCGGAAGGAGCATCTGACGAATCATGTGCGCCTGCATACGGGCGACTCGCCGCACAAGTGTGAATATTGCCAGAAGACGTTCACGCGGAAGGAGCATCTCAACAATCATATGCGTCAGCACTCCAGCGACAATCCGCACTGTTGCAATGTGTGCAACAAGCCGTTTACGCGCAAGGAGCATCTGATTAATCACATGTCACGCTGCCATACGGGCGATCGTCCATTTACATGCGAAACATGCGGGAAATCCTTTCCGCTCAAGGGCAATCTGTTGTTCCATCAGCGTAGCCATACGAAGGGACAGGAGTGCGAGCGCCCGTTTGCATGCGAAAAGTGCCCGAAAAATTTTATATGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTATGCTGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCACTCGACGACGACGATGCACACGATCCAACAGATCACAGCAGGAGCGGCCGGTGCCGCCAATGTGGAACAACATCCGGTGGTTTACTAA
Protein Sequence
MQHVSAASSVPSVVTPVVTTGGGTTITLGGGPPPSSLPKSEIKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAAHVTTTTTSSSTASSSAGSAGAGTTTTSTGELLMPKMEGGIHGVDAGGGNGGQSSQVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGMLTQVKQEVKPIIIPHHSTTTMHTIQQITAGAAGAANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00599004;
90% Identity
iTF_00919214; iTF_00916400; iTF_00600463;
80% Identity
-