Lcol016107.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lordiphosa collinella
Gene Symbol
-
Assembly
GCA_018904265.1
Location
JAEIFV010000058.1:237931-248188[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3.1e-05 0.0015 19.1 2.1 1 23 227 249 227 249 0.97
2 18 1e-05 0.00051 20.6 0.4 1 23 255 277 255 277 0.97
3 18 0.0015 0.075 13.8 0.9 1 23 283 305 283 305 0.95
4 18 2.2e-05 0.0011 19.6 3.1 1 23 311 333 311 333 0.97
5 18 5e-05 0.0024 18.4 4.7 1 23 339 361 339 361 0.99
6 18 9.1e-05 0.0045 17.6 5.7 1 23 367 389 367 389 0.97
7 18 4.5e-07 2.2e-05 24.9 4.3 1 23 395 417 395 417 0.98
8 18 1.6e-07 7.8e-06 26.3 2.4 1 23 423 445 423 445 0.97
9 18 9.3e-05 0.0046 17.6 6.7 1 23 452 474 452 474 0.97
10 18 0.00016 0.0079 16.8 6.5 1 23 480 502 480 502 0.98
11 18 1.4e-05 0.00071 20.1 4.5 1 23 508 530 508 530 0.98
12 18 1e-05 0.00051 20.6 8.1 1 23 536 558 536 558 0.98
13 18 8.5e-06 0.00042 20.8 7.6 1 23 564 586 564 586 0.97
14 18 9.5e-07 4.7e-05 23.8 7.7 1 23 592 614 592 614 0.98
15 18 0.0003 0.015 16.0 9.5 1 23 620 643 620 643 0.95
16 18 0.00011 0.0052 17.4 0.9 1 23 649 671 649 671 0.98
17 18 0.0012 0.057 14.1 3.4 1 23 681 703 681 703 0.97
18 18 1.3e-05 0.00065 20.3 1.6 1 23 709 732 709 732 0.96

Sequence Information

Coding Sequence
ATGCAGCACGTGAGCGCTGCCAGTTCGGTTCCCTCGGTGGTCACACCGGTGGTAACTACTGGTGGTGGCACAACAATAACATTGGGCGGTGGCCCACCACCCTCATCCCTGCCCAAATCCGAGATCAAAGAGGATGGCAAACCGCCTCATGGCATTGAAATGTATAAAGTGAACATTGAAGATATCTCCCAGCTGTTCACCTACCACGAAGTCTTTGGCAAAATCCATGGGGATGTGGTGAATCATCAATTGGCGGCGGCGGCACATGGAGGCCAGCTGCCACCGCCACCTCCATTGCCGCCGCAGACGCATGCAGCGAGTGCAGCGGCGGCAGCTGCCGCTGTTGCGGCCTCCTCAAATAATGCGGCAGTTGCTGCGGTGATGGCGTCCGCGAATGCAGCGGCGGTGGCGGCAGCAGCAGCCTCGGCAGCGGGGGTGGGCGGCGTGCCCTCAACCAGTGGGGGTGGCCATATAGTCACAACGACCACGACCAGCTCGTCCACGGCCAGCAGTAGTGCAGGGAGTGCGGGGGCAGGCACGACGACAACCTCAACGGGTGAGTTGCTTATGCCGAAAATGGAGGGCGGCCTACACGGCGTGGACGCTGGCGGCGGCAACGGCGGTCAATCATCCCAGGTGACCCTGGCGCCCGATGGCACGCCCATTGCCACCGGGACACATGTCTGCGATATTTGTGGGAAAATGTTCCAGTTCCGCTATCAGCTAATTGTCCACCGCCGCTATCACAGCGAACGCAAGCCGTTCATGTGTCAGGTGTGCGGTCAGGGGTTTACCACCTCACAGGATCTGACGCGGCATGGCAAGATCCACATTGGCGGTCCCATGTTCACCTGCATCGTGTGCTTCAATGTGTTCGCCAACAACACCAGCCTGGAGCGGCATATGAAACGTCACTCAACGGACAAGCCATTCGCCTGCACCATTTGCCAAAAGACATTTGCCCGCAAAGAGCACCTGGACAATCATTTTCGTTCGCACACGGGTGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTCACGCGCAAGGAGCATATGGTTAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACACCGCATCAGTGCGATGTCTGCGGCAAGAAATACACGCGCAAGGAGCATCTAGCCAATCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAAATCTGCGGCAAGAGCTTTAGCCGTAAGGAGCACTTCACCAATCACATACTCTGGCATACAGCAGGCGAGACGCCGCATCGGTGCGACTTCTGCTCCAAGACGTTTACACGCAAGGAGCATTTGTTAAATCACGTGCGCCAGCATACGGGCGAGTCACCGCATCGCTGCTCCTACTGCATGAAGACCTTCACACGCAAGGAGCATCTGGTTAATCATATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAATCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACTCGCAAGGAGCATTTGACGAATCATGTGCGCCAGCACACGGGCGACTCGCCGCATCGATGTTCGTACTGCAAGAAGACGTTCACCCGGAAGGAGCATCTGACGAATCACGTGCGACTGCATACGGGCGACTCGCCGCACAAGTGTGAATATTGCCAGAAGACGTTCACACGGAAGGAGCATCTCAACAATCATATGCGTCAGCACTCCAGCGATAATCCGCACTGTTGCAATGTGTGCAATAAGCCGTTTACGCGCAAGGAGCATCTGATCAATCATATGTCACGCTGCCATACGGGCGATCGTCCATTTACATGCGAAACATGCGGCAAATCCTTCCCGCTCAAGGGCAATCTGTTGTTCCATCAGCGTAGCCATACCAAGGGACAGGAATGCGAGCGTCCGTTTGCATGCGAAAAGTGCCCAAAGAATTTTATCTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACACTGTGCAGCAAGGCTTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCCGTGCATCCGCATCCGCAAATACCGGCTGGTATGCTGACGCAAGTCAAGCAGGAAATGAAACCGATCATAATTCCCCACCACTCGACGACGACGATGCACACGATCCAACAGATCACAGCAGGAGCGGCCGGTGCCGTGCCCATAGCCTTGATCAGTGATCCCAGTGCTTTGGCAAGAGCTGCCATGCAACTGCAACATTTGCCAGCCAATGTGGAACAACATCCGGTGGTTTACTAA
Protein Sequence
MQHVSAASSVPSVVTPVVTTGGGTTITLGGGPPPSSLPKSEIKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAAHGGQLPPPPPLPPQTHAASAAAAAAAVAASSNNAAVAAVMASANAAAVAAAAASAAGVGGVPSTSGGGHIVTTTTTSSSTASSSAGSAGAGTTTTSTGELLMPKMEGGLHGVDAGGGNGGQSSQVTLAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQECERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGMLTQVKQEMKPIIIPHHSTTTMHTIQQITAGAAGAVPIALISDPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00529689;
90% Identity
iTF_00915491;
80% Identity
-