Lcap044882.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- Trerf1
- Assembly
- GCA_949126875.1
- Location
- OX421409.1:12678277-12722751[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-08 7.9e-05 24.3 0.2 2 46 1115 1159 1114 1159 0.96
Sequence Information
- Coding Sequence
- atgacTTCTAGTGGCGTCACTGTCATGTTACATTCATTCAACCAATACAGTCATTTGTCAACAACTACATCTGATGATAAGAAATCTCTAAGTACGGAATTGGTGAAGGTTTCCACAAAACGTGCCAGGCCTAAACCCACATCGCCAAATAGACAGGGTCCTCAGCAATGTCAGGTCTGTGCCAAAGTATTCGGAAACGCCTCTGCCTTGGCAAAACACAAACTGACTCATAGCGACGAAAGAAAATATGTTTGTAGCATGTGCGGAAAAGCTTTCAAGCGACAAGACCACCTAAACGGTCATATGTTAACCCATCGCAATAAGAAGCCCTATGAGTGCAAAGCAGAAGGATGTGGCAAGAGCTACTGCGACGCGAGATCCTTACGAAGACATACTGAAAATCACCATAGCTCTCCCGCCACAACGGTTAATACTACAACGACAACATTATCACCTGCGCAAGGTGCTGCTTCAGGAGATGCTGCCTCGCCTCACGGTTCCAGTTGTATACAGTATGCACCGCCTCCGACGTCGATTACCGCTTCGACCACGACGTCCATTACAGCTTCCAACGGAAAAAGTCAGTTGCAACAGCTGTTGGCTACAGATTCAACAAAAGGCAGCAACAGTTCCAACAATGACGGCTTAACTAAACAGCAGCTGGATTTGATACATCAAATAATGGAACAAACTCAGCGACAATCCCAGGCTGTAGCAGCGGCAGCGGCGGCGGCATCAAACAAATCCCCCTCGTCAAAAACTTCCTCCAGTGGCGGCAGCAGTATCAAAAGCGGCAGCAAATCTACGTCAAAATCGCATCAGAGCAAAAACACATGGTTACCAACGGCAAGTCAGCAACAACAGCAGACGACAAGTAAAGGAAGCAGTAGCAGTAGCAGCACCTCCACAAGCGGAGCTCCGAGTCCGCAATCTAAAGTTACCACCACGTCAACACCCACATCGCCAGTAAACTCTACAACAGGCAAAACAGAACCAAAACCAGTGGAGTGCAACTTGTGTCATCGAAAGTTCAAAAATATACCGGCCCTCAACGGTCACATGAGGCTGCATGGAGGGTATTTCAAAAAGgacaatgaaaacaaaaaaaacgaaaagaaaGATCCGGGTGGTCCTCCATTACAAACGGCCAGTTTTAGCGTGCGAGCTCTTATAGAAGAAAAAATCATCAACAAGAGGATAACGAATACACCTCAACCCCCAAATGAAGACCAAAAGTCTAACGCTCCACCTCTATTTCCTTTAAACGTGCATTCCTCACCATCTAACAACACTGATCTAGAATCGAAAATTTCATCGTTCGTGGTACCAGCACCTCCACAACAGACCTCTGAAAAATCCCGTAGACATTCCGAAGCGGACGCATTCCGTAACAGTACCACACAGCAGGAGGCTCAAGCGTTGGCCGATCTCATTCTTAAACGCGAAAAAGCTACAGTGAAAAGAACTACCTCTGATCCAGGTCAGTCTTCACCAATACTACAGTTCCAAACGAATGATTCCTTTACTTTGGCCAACGTTACTTACCAATCCGAAGAAGCAGAATTCATATCTTCAAGTTTACAAGAAGGCGTGTTTACTCAAGTACAAGACAGCATGCTTCTACAAGGTGTGGATCCCAATCAACTAGCATCGATTCAATTTCAAGCTGAATCTCTTCTGCAAGATCAAAACGAGCAACAAATTCAAGAGTTTAAAATTGAAGATATGAATCTTCAAGAAACTGTAGTTCAACAATCGCCTTCGTATCAATCTAATCATTCGGTCAACCAGGAATTGCAAGCGGTACTTGATTCACCCTTACCGGAGAGTTTGGCTGAATTCAGCACTTTTCATTCGACAAACAGTATCGACATGCCTTCTCCAAGCTACCAAACGCAATCACCTGTACAATATGCTCGATCGCCGCATACAATTACCGCACAATCACCACTTCAAAGTCCATTAATAAGGCACGACTCTCCTGGATTTGCATATCCTACGCCACCTGCAAGCCATGAAGGACAAAGTCCAGGGTTTGGACAGAATACAATGCTGCCTATGGTATCTCCCAATGCTCAAGAATATGGACAGATTGTCGAAAGAGGTGTTTACGAAGAACCACCACAAGCATCTTCACCGTTATCTGCCGCATTTTTCACTTCAACAATGTCTAGTTCGGCAGCAGTGGAAGAAGCGTTAGAGGAAGTACTGCCAGGAGAACCTCTTTATCCTCTAACTAACTCACCTTCTCCTCAATCTCCTCTTGGTCTTACTCCGGTGCCGTCACCGATATCTAACATAGTAAGCACTTCGGATCCTCAGCCTTCGACAACATTCTCACCGTCTCTGAATACTTCCACATTTTCCATGTCTGGTAACTGGTGCAACGGAGTGATGCTACCAAACTCGGATGATCCCTTACTATCCAGCAGTCCCAAAGATTTTGTTCAGAGGAGAAAAATTGAAATCAACGGAGTACCATTGAGACTTATAAGTAACAACGGCCTAATTGAATTGAACAGCTCGAATTTTGCTGGAATTCTCGTCGATGCCAACGGAGAGATTAAACTCTTTCAAACTGGCGGTAGTACgtttcaaactaaaaatattttgttgacgaATACTCCTTTGATTACTCATGATATCGACGACAAATGTAAAAAAGTGATAAAAACCGTACAATGCACAATTCCAACGAAGCACGTTATTAACAGGCCTAAGCAAATTAATGAAATTAAGAAAGAAGACAACAACGATGTTTTTTTAAGTCCTACTTCGATACCTGCTAGTCCTGTAAGAATATCTAGAAAAAGGCCTAGAATGGAACCCCTTCAGTTACCTGTATTGCATCAATCAAAACTTAGAGCTACAAGAAGTAAACCTCCAGGATGTGCGAGATATACTCCTCAGCCAATCTTGAGCCCACAAAGAGCAGGAACGGGACTTTACACAAATATTAAACACAGAAGCGAGGATGGTATGAACTGGAACAATGACCCAATTCCAGAAAGTGATTCCACCCCTCACGTTAACGTCGGATCTCAGTTCCAATGTAAAATACCGAACTTTTCATCGGCGCCTAATAGAGGCAGCTCGGAACCAACGTATGAAGATCTTTTATGGGATCCTGGTATAAGTAATTGTACTGATAACGAAGTGGATATGTACCTGGATTTCGCTTGTTGTGCTGCTGTTCCAGGCGGTGGAAGAAATAAAGAATATGCAATGCACCTTCTCCATATGTGTGGGGGAAACATACACGACGCAATGTTGCGGTTGATGCAACCCTCTCCGAATCTTCCCGCCGATCATCCTCTCTTAGCGTATCAGTATTGCGAAAGTGACAAATGGTCAACGACAGAAACTGACATCTTCCACAAGTCACTGCTCAAGTACGATAAGGATTTCCACAATATTGCTCAAGAGattCGAACGAAAACTGTTAAGCAGTGTGTGCAATTTTATTACGTTTGGAAAAAAGTGTGCGCCGACGAGTATAGAAGATTGAAGCATCTCAGAGAGAGGAGGAATTATTACTACAAACACGCAGAAATGGATATAGATGAAAAACTATTTGCCGATGTTAAACTTCTAGGGATTGCAGATAGTGGTTGTCCGATGCCCATACCGGATACAAGAAACTTTGTGTGCGAGTTCCCCGATTGTTCAGCAAGTTTCAATTCTCGAGCAGCGTTAAATGGACACATTCGAATACACGGCGGTACGGCAAGAAATTCGCCGACGCCGTCATCGACTACGTCAGAAAGGCGAACAGCATATGTCACCTCTTCGAACATATGTCACCCGGACTCGACCGAAGAGTACCCCTGTAAGATATGCGGGAAGTAA
- Protein Sequence
- MTSSGVTVMLHSFNQYSHLSTTTSDDKKSLSTELVKVSTKRARPKPTSPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSPATTVNTTTTTLSPAQGAASGDAASPHGSSCIQYAPPPTSITASTTTSITASNGKSQLQQLLATDSTKGSNSSNNDGLTKQQLDLIHQIMEQTQRQSQAVAAAAAAASNKSPSSKTSSSGGSSIKSGSKSTSKSHQSKNTWLPTASQQQQQTTSKGSSSSSSTSTSGAPSPQSKVTTTSTPTSPVNSTTGKTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDNENKKNEKKDPGGPPLQTASFSVRALIEEKIINKRITNTPQPPNEDQKSNAPPLFPLNVHSSPSNNTDLESKISSFVVPAPPQQTSEKSRRHSEADAFRNSTTQQEAQALADLILKREKATVKRTTSDPGQSSPILQFQTNDSFTLANVTYQSEEAEFISSSLQEGVFTQVQDSMLLQGVDPNQLASIQFQAESLLQDQNEQQIQEFKIEDMNLQETVVQQSPSYQSNHSVNQELQAVLDSPLPESLAEFSTFHSTNSIDMPSPSYQTQSPVQYARSPHTITAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPGFGQNTMLPMVSPNAQEYGQIVERGVYEEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGEPLYPLTNSPSPQSPLGLTPVPSPISNIVSTSDPQPSTTFSPSLNTSTFSMSGNWCNGVMLPNSDDPLLSSSPKDFVQRRKIEINGVPLRLISNNGLIELNSSNFAGILVDANGEIKLFQTGGSTFQTKNILLTNTPLITHDIDDKCKKVIKTVQCTIPTKHVINRPKQINEIKKEDNNDVFLSPTSIPASPVRISRKRPRMEPLQLPVLHQSKLRATRSKPPGCARYTPQPILSPQRAGTGLYTNIKHRSEDGMNWNNDPIPESDSTPHVNVGSQFQCKIPNFSSAPNRGSSEPTYEDLLWDPGISNCTDNEVDMYLDFACCAAVPGGGRNKEYAMHLLHMCGGNIHDAMLRLMQPSPNLPADHPLLAYQYCESDKWSTTETDIFHKSLLKYDKDFHNIAQEIRTKTVKQCVQFYYVWKKVCADEYRRLKHLRERRNYYYKHAEMDIDEKLFADVKLLGIADSGCPMPIPDTRNFVCEFPDCSASFNSRAALNGHIRIHGGTARNSPTPSSTTSERRTAYVTSSNICHPDSTEEYPCKICGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01015119;
- 90% Identity
- iTF_00911425; iTF_00459251; iTF_00458862; iTF_00736121; iTF_00735499;
- 80% Identity
- iTF_00911425;