Basic Information

Insect: Galerucella nymphaeae
Gene Symbol: Trerf1
Assembly: GCA_963978555.1
Location: OZ021704.1:42519127-42546691[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00023 0.036 15.7 0.1 2 23 44 65 43 65 0.97

2 6 6.9e-08 1.1e-05 26.8 1.3 1 23 71 93 71 93 0.99

3 6 8.1e-05 0.013 17.1 2.6 1 23 99 123 99 124 0.95

4 6 0.00044 0.068 14.8 0.8 2 23 320 341 319 341 0.97

5 6 0.00076 0.12 14.1 0.0 1 23 1198 1222 1198 1222 0.97

6 6 2.8e-05 0.0043 18.6 0.7 1 23 1258 1280 1258 1280 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00023	0.036	15.7	0.1	2	23	44	65	43	65	0.97
2	6	6.9e-08	1.1e-05	26.8	1.3	1	23	71	93	71	93	0.99
3	6	8.1e-05	0.013	17.1	2.6	1	23	99	123	99	124	0.95
4	6	0.00044	0.068	14.8	0.8	2	23	320	341	319	341	0.97
5	6	0.00076	0.12	14.1	0.0	1	23	1198	1222	1198	1222	0.97
6	6	2.8e-05	0.0043	18.6	0.7	1	23	1258	1280	1258	1280	0.98

Sequence Information

Coding Sequence: atgttatatttttttgcagTGTCGACAACTACATCTGATGATAAGAAATCTCCAAGTACGGAATTGGTTAAGGTTTCCACAAAACGTGCCAGACCTAAACCCACATCGCCAAATAGACAGGGTCCTCAGCAATGTCAGGTCTGTGCCAAAGTATTCGGAAACGCCTCTGCCTTGGCAAAACACAAACTGACTCATAGCGACGAAAGAAAATATGTTTGTAGCATGTGTGGAAAAGCTTTCAAGCGACAAGACCACCTAAACGGTCACATGCTAACCCATCGCAATAAGAAGCCCTATGAGTGTAAAGCAGAAGGTTGCGGCAAGAGTTACTGCGACGCGAGATCCTTACGAAGACATACTGAAAATCACCATAGCTCTCCCGTCACAACGGTGAACACAACAACTACAACATTATCACCCGCCCAAGGTGCTGCTTCAGGAGATGCTGCCTCGCCACACGGTTCCAGTTGCATACAGTATGCACCGCCTCCGACGTCGATTACCGCTTCGACTACGACGTCGATTACTGCTTCCAACGGAAAGAGTCAGTTGCAGCAGCTGTTGGCTACAGATTCAACAAAAGGCAGCAACAGTTCCAACAATGACGGTTTAACTAAACAGCAGCTGGATTTGATACATCAAATAATGGAACAAACTCAGCGACAATCCCAGGCTGTAGCAGCGGCAGCGGCATCAAACAAATCCCCTACGTCAAAAACTTCCTCCAGTGGCGGCGGCAGTATCAAAAGCAGCAGCAAATCCACGTCGAAATCGCATCAGAGCAAAAACACATGGTTGCCAACGGCAAGTCAACAACAGCAGACAAGTAAAAGCAGCAGTACTAGTAGCAGCACCTCCACAAGCGGAACTTCGAGTCCGCAGTCTAAAGTTACGACCACGTCAACGCCCACATCGCCAGTAAATTCTACAACTGGCAAAACCGAACCAAAACCAGTGGAGTGCAACTTGTGTCATCGAAAGTTCAAAAATATACCGGCCCTCAATGGTCACATGAGACTTCATGGAGGGTATTTCAAAAAGgacaatgaaaacaaaaaaaacgaaAAGAAAGATCCGGGTGGTCCTCCATTACAAACGGCCAGTTTCAGCGTTCGAGCTCTTATAGAagaaaaaatcatcaacaagAGGATAACGAACACACCTCAACCATCTAATGAAGACCAAAAGTCTAACGCTCCACCTCTATTTCCTTTAAACGTGCATTCCTCTCCATCTAACACCGATCTAGAATCGAAAATTTCTTCTTTCGTTGTACCAGCACCTCCACAACAGACCTCCGAGAAATCCCGTAGACATTCCGATGCGGACGCATTCCGTAGCAGTACCACACAGCAGGAGGCTCAAGCGTTAGCCGATCTCATTCTCAAACGCGAAAAAGCTACAGTGAAAAGAGCTACCTCGGATCCAGGTCAATCCTCGCCAATACTACAATTCCAAACGAATGATTCCTTCACTTTGGCCAACGTTACTTACCAATCCGAGGAAGCAGAATTTATATCTTCAAGTTTGCAAGAAGGGGTGTTCACTCAAGTACAAGACAGTATGCTTCTACAAGGTGTAGATCCCAATCAACTAGCATCGATTCAATTTCAAGCTGAATCTCTTCTGCAAGATCAAAACGAGCAGCAAATCCAAGAATTTaaaattgaagatataaatCTTCAGGAAACTGTAGTTCAACAATCGCCTTCGTATCAGTCTAATCACTCGGTCAATCAGGAATTGCAAGCGGTACTTGATTCGCCCTTACCGGAAAGTTTGGCTGAATTCAGCACTTTTCATTCGACAAACAGTATCGACATGCCTTCTCCAAGCTACCAAACTCAATCGCCTGCACAATATGCTCGGTCGCCGCACACGATTACCGCACAATCTCCACTGCAAAGTCCGTTAATAAGGCACGACTCTCCCGGATTTGCATATCCTACGCCACCTGCAAGTCATGAAGGTCAAAGTCCAGGGTTCGGACAAAATACAATGCTGCCTATGGTATCTCCCAATGCTCAAGAATATGGACAGATTGTCGAAAGAGGTGTTTACGAAGAACCACCACAAGCGTCTTCACCGTTATCTGCAGCCTTTTTCACTTCAACAATGTCTAGTTCGGCAGCAGTAGAAGAAGCGTTAGAGGAAGTACTGCCAGGAGAACCTCTTTATCCTCTAACAAACTCACCTTCTCCTCAATCTCCTCTCGGTCTTACTCCGGTACCGTCACCGATATCTAACATAGTAAGCACTTCGGATCCGCAGCCTTCTACAACATTCTCACCGTCTCCGAATACTTCTACATTTTCCATGTCCGGCAATTGGTGCAACGCAGTGATGCTACCAAACTCGGATGATCCCTTACTATCCAGCAGTCCCAAAGATTTTGTCCCGAGGAGAAAACTCGAAATCAACGGAGTGCCATTGAGACTTATAAGCAACAACGGCCTAATTGAATTGAACAGCTCGAATTTTGCCGGAATACTCGTCGATGCCAACGGAGAGATCAAACTCTTTCAAACTGGCGGTAGTACCTttcaaactaaaaatattttgttgacgAATACTCCTTTGATTACTCATGATATCGACGACAAATGTAAAAAAGTGATAAAAACCGTACAATGCACAATTCCAACGAAGCACGTTATTAACAGGCCTAAgcaaattaatgaaattaagAAAGAAGACAACAACGATGTTTTTTTAAGTCCTACTTCgaTACCTGCTAGTCCGGTAAGAATATCTAGAAAAAGGCCTAGAATGGAACCCCTTCAATTACCTGTATTGCATCAATCGAAACTTAGAGCTACAAGAAGTAAACCTCCAGGATGTGCTAGATATACTCCTCAGCCAATCTTGAGCCCACAAAGACCAGGAACGGGACTTTACACAAATATTAAACACAGAAGTGAGGATGGTATAAACTGGACCAGTGATCCCATTCCAGAAAGTGATTCCACCCCTCACGTTAACGTCGGATCTCAGTTCCAATGTAAAATACCGAACTTTTCATCGGCGCCTAATAGAGGCAGCTCGGAACCAACGTATGAAGATCTTTTATGGGATCCTGGTATAAGTAATTGTACAGATAGCGAAGtgGATATGTACCTGGATTTCGCTTGCTGCGCTGCTGTTCCAGGCGGTGGAAGAAATAAAGAATATGCGATGCATCTTCTTCATATGTGTGGGGGAAACATACATGACGCAATGTTGAGGTTGATGCAACCCTCTCCGAATCTTCCTGCCGATCATCCTCTCTTAGCGTATCAGTATTGCGAAAGTGACAAATGGTCAACGACAGAAACTGACATCTTCCACAAGTCACTGCTCAAGTACGATAAGGATTTCCGCAATATTGCACAAGAGattCGAACGAAAACTGTTAAGCAGTGTGTGCAATTTTATTACGTTTGGAAAAAAGTATGCGCCGATGAGTATAGGAGATTGAAACATCTCAGAGAGAGGAGGAATTATTACTACAAACACGCAGAAATGGATATAGATGAAAAGCTGTTTGCCGATGTCAAGCTACTGGGGATTGCAGATAGTGGTTGTCCGATACCCATACCTGATACAAGAAACTTTGTGTGCGAGTTCCCCGATTGTTCAGCGAGTTTCAATTCTCGAGCAGCATTAAACGGTCACATTCGAATACACGGCGGTACCGCAAGAAACTCGCCGACTCCGTCATCGACAACGTCAGAAAGGCGAACAGCATCTGTCACTTCTTCGAGCATGTGTCACCCGGACTCGACCGAAGAGTACCCCTGTAAGATATGCGGGAAAGTGTTCACAAAAATCAAAAGTCGTAGTGCCCATATGAAGTCCCATCGACCCCCCGACGCTGAACCGgtcaaaagaaaagaaaaagatacCCCCAGCTACGAACTTTCCGTGCCAAGCCCGTTTAGTACTTAG
Protein Sequence: MLYFFAVSTTTSDDKKSPSTELVKVSTKRARPKPTSPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCSMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSPVTTVNTTTTTLSPAQGAASGDAASPHGSSCIQYAPPPTSITASTTTSITASNGKSQLQQLLATDSTKGSNSSNNDGLTKQQLDLIHQIMEQTQRQSQAVAAAAASNKSPTSKTSSSGGGSIKSSSKSTSKSHQSKNTWLPTASQQQQTSKSSSTSSSTSTSGTSSPQSKVTTTSTPTSPVNSTTGKTEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDNENKKNEKKDPGGPPLQTASFSVRALIEEKIINKRITNTPQPSNEDQKSNAPPLFPLNVHSSPSNTDLESKISSFVVPAPPQQTSEKSRRHSDADAFRSSTTQQEAQALADLILKREKATVKRATSDPGQSSPILQFQTNDSFTLANVTYQSEEAEFISSSLQEGVFTQVQDSMLLQGVDPNQLASIQFQAESLLQDQNEQQIQEFKIEDINLQETVVQQSPSYQSNHSVNQELQAVLDSPLPESLAEFSTFHSTNSIDMPSPSYQTQSPAQYARSPHTITAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPGFGQNTMLPMVSPNAQEYGQIVERGVYEEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGEPLYPLTNSPSPQSPLGLTPVPSPISNIVSTSDPQPSTTFSPSPNTSTFSMSGNWCNAVMLPNSDDPLLSSSPKDFVPRRKLEINGVPLRLISNNGLIELNSSNFAGILVDANGEIKLFQTGGSTFQTKNILLTNTPLITHDIDDKCKKVIKTVQCTIPTKHVINRPKQINEIKKEDNNDVFLSPTSIPASPVRISRKRPRMEPLQLPVLHQSKLRATRSKPPGCARYTPQPILSPQRPGTGLYTNIKHRSEDGINWTSDPIPESDSTPHVNVGSQFQCKIPNFSSAPNRGSSEPTYEDLLWDPGISNCTDSEVDMYLDFACCAAVPGGGRNKEYAMHLLHMCGGNIHDAMLRLMQPSPNLPADHPLLAYQYCESDKWSTTETDIFHKSLLKYDKDFRNIAQEIRTKTVKQCVQFYYVWKKVCADEYRRLKHLRERRNYYYKHAEMDIDEKLFADVKLLGIADSGCPIPIPDTRNFVCEFPDCSASFNSRAALNGHIRIHGGTARNSPTPSSTTSERRTASVTSSSMCHPDSTEEYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVKRKEKDTPSYELSVPSPFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01015119;
90% Identity: iTF_00910662;
80% Identity: iTF_00735499;