Lcap006532.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- ttk
- Assembly
- GCA_949126875.1
- Location
- OX421397.1:12012067-12016453[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-15 6.9e-13 49.7 0.0 2 42 342 383 341 386 0.95
Sequence Information
- Coding Sequence
- atgACAGTCCAACAGTATTGTTTAAGATGGAATAATCATCAACCAAACTTCATATCTGTATTTTCTAGTCTTCTAAATAGTCAATCCCTTGTAGATGTCACTTTGGCAGCTGAAGGCAAACAACTACAAGCACATAAAGTTGTTTTATCTGCATGTAGCTCTTACTTCCAAtcATTGTTTGCAACCAATCCATGTAAACATCCAATTGTAATTCTCAAAGATgtcaaatttattgatttaaaagtAATGGTGGATTTTATGTACCATGGTGAAGTTAGTGTATCTCAGGAACAACTACCTTATATATTGAAGACAGCAGAAATGTTGAAAATTAAAGGGTTGACAGAAATACCCATGGAGAATCCAGCTGTCAAGTGTCAAAGTCAGCCAGAAAAAGGAGAAATAAGTGCACAAAGTACAGATAATTGGAGTTTGGAAGAAAATAGAGCCATGAGTCCTTCTTCACCTTCAAGTAAACGgagAAGATTGAAAAAGAACATAATATGTAGTCCAACGATAACAGCAGAACCTGCAGAAGGCACACAGAACGAAATTTTATTGAGTACTGTAGATAACgtttttgaaacagttttaaaAACAGAAGAATCTAGAAATTTTGAAGGCAATTCACAAAAATACAACGGTATTCCTATTCCAAGTATACAACCGTCAACATCTCATCAAAGGGAGACAGAACAACCTACCCATCAAATAATTACAcaGATAACTCCTCcccaagaaataaatataaatacttcaCAAGTAGATTGTTCACCAGTAGAAATGTCTCGAACTTGTACAAGTAGTCAACCAACAACTGGCATTCAGTGGAATGTTTTGGATCAAACTGGCTTCACGCATTTTTCATCAACCTCCGCAGTATTATCAAATAACGTTGGTACACAATTCACCCACAATAGCGAATCACATCCCACCTCTCATCCCAATAACAATATCTTACACCATCCCAATACCTCTGATCAATACCAAAAtcataaaagaaaaagaagtttCAATCCACAAGATGAGAACTTCCTTAGAGCATTAGAAGCCGTCAGATTTGGCGGGATAGGATTTTGCAAGGCCGCTAGGATGTACGGAGTGAATAATCGAACTTTGTGgttagaatataaaaaaagaggGTATCCGAATTTTAGGCTTAGTATTAAGAATCGAAATCAACAATCGGACAAATCTAAAGAGCAATCTGTAGTTGGTAGTGATAGAGAAGCGTGTACGGTTAATCATCCTATAGCGATTATAAGTAGTGATGTTTTTGACGGGAAACACGTGGACTTTAAACAGGTTCAACAACGACCGAAATATTATGATGGTAGCGAAAATCCTACAGAAACTATTAATTTTCAAAGTATCAATCTTGAACAAATATAG
- Protein Sequence
- MTVQQYCLRWNNHQPNFISVFSSLLNSQSLVDVTLAAEGKQLQAHKVVLSACSSYFQSLFATNPCKHPIVILKDVKFIDLKVMVDFMYHGEVSVSQEQLPYILKTAEMLKIKGLTEIPMENPAVKCQSQPEKGEISAQSTDNWSLEENRAMSPSSPSSKRRRLKKNIICSPTITAEPAEGTQNEILLSTVDNVFETVLKTEESRNFEGNSQKYNGIPIPSIQPSTSHQRETEQPTHQIITQITPPQEININTSQVDCSPVEMSRTCTSSQPTTGIQWNVLDQTGFTHFSSTSAVLSNNVGTQFTHNSESHPTSHPNNNILHHPNTSDQYQNHKRKRSFNPQDENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKNRNQQSDKSKEQSVVGSDREACTVNHPIAIISSDVFDGKHVDFKQVQQRPKYYDGSENPTETINFQSINLEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735404; iTF_00735931; iTF_00911196; iTF_00387377; iTF_00387117; iTF_01106485; iTF_01105491; iTF_00459070; iTF_00458782; iTF_00025951; iTF_00026199;
- 90% Identity
- iTF_00735404; iTF_00735931; iTF_00911196;
- 80% Identity
- iTF_00911196;