Ocom033780.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- ttk
- Assembly
- GCA_035357415.1
- Location
- CM068983.1:20813423-20819359[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-15 6.5e-13 50.6 0.0 2 42 344 385 343 388 0.95
Sequence Information
- Coding Sequence
- ATGACGGTCCAACAGTATTGTCTAAGATGGAACAATCATCAGCCAAACTTCATATCTGTATTTTCTAGTCTTCTAAATAGTCAATCTTTGGTGGATGTTACTTTGGCAGCTGAAGGAAAACAATTACAAGCACATAAAGTTGTTTTATCTGCTTGTAGTTCTTACTTTCAAtcattGTTTGCTACAAATCCATGTAAACATCCCATTGTGATACTCAAAGATGTCAAGTTTAGTGATTTAAAAGTAATGGTGGATTTTATGTATTATGGTGAAGTAAGTGTATCACAGGAGCAACTAccttgtatattaaaaacagcAGAAATGCTGAAAATCAAAGGATTGACAGAAATACCTATGGAAAATCCAGGTGTTAAGTGTCAAAGTCAGTCAGAAAAAACAGAAATCAGTGCACAAAGTACAGAAAACTGGATTTTGGAGGAAAATAGGCCTGTAAGTCCATCTTCACCTTCAAGTAAGAGaAGAAGATTAAAAAAGAACGTAATATGTAGTCCAACGATAACAACAGAACCTGCTGAAAGCACGCCAAACGAAATTTTATTAAGTACAGTTGATAATGTATTTgaaacagttttaaaaacaGAAGAATCTAGAAATTTAGAAGACAATTCGCAGAAATATAACGGTATTCCAATTTCTTTACCATCGACGTCTCATCAAAGGGAAACTGAACAATCCACACATCAAATAATTACAcAGATAACTCCACCTCAAGAAACAAATGTAAATGCTTCACAAGTAGATTGTACCCCCGTAGAAATGTCTCGTACTTGTACAACTGACCAACAGGGAACTGGCATTCAGTGGAATGTTTTGGATCAAACTGGCTTCACGCATTTTTCATCAACCTCCGCAGTATTATCGAATAATGCTGGCACACAATTCACTCACAATAGCGAAACGCATCCCACCACCTCCCATCCAAATAACAATATCTTACACCATCCCAATACCGTTGTGACTGAACAGTATCAAAatcataaaagaaaaagaagtttCAATCCTCAAGGCGATGAAAACTTCCTGAGAGCTCTAGAAGCCGTCAGGTACGGCGGAATAGGATTTTGCAAGGCAGCTAGGATGTACGGAGTGAACAATAGAACTTTGTGGTTAGAATATAAGAAACGGGGTTATCCGAATTTTAGGCTTAGCATTAAGAATCGCAACCAACAATCGGACAAAATTAAAGAACAAGTTAACGATAGGGACACGTGTACGGTGAATCCCATAGCGATTATCAGTAGTGATGTGTTTGATGGGAAACACGTGGACTATAAGCATGTTTCTCAACGATCTAAATATTTCGACGGTAGTGAACACGTCGCGGATgctattaattttcaaaatatcaaTCTCGAACAAATATAG
- Protein Sequence
- MTVQQYCLRWNNHQPNFISVFSSLLNSQSLVDVTLAAEGKQLQAHKVVLSACSSYFQSLFATNPCKHPIVILKDVKFSDLKVMVDFMYYGEVSVSQEQLPCILKTAEMLKIKGLTEIPMENPGVKCQSQSEKTEISAQSTENWILEENRPVSPSSPSSKRRRLKKNVICSPTITTEPAESTPNEILLSTVDNVFETVLKTEESRNLEDNSQKYNGIPISLPSTSHQRETEQSTHQIITQITPPQETNVNASQVDCTPVEMSRTCTTDQQGTGIQWNVLDQTGFTHFSSTSAVLSNNAGTQFTHNSETHPTTSHPNNNILHHPNTVVTEQYQNHKRKRSFNPQGDENFLRALEAVRYGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKNRNQQSDKIKEQVNDRDTCTVNPIAIISSDVFDGKHVDYKHVSQRSKYFDGSEHVADAINFQNINLEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910438;
- 90% Identity
- iTF_01106485;
- 80% Identity
- iTF_01106485;