Dcar010117.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- ttk
- Assembly
- GCA_029229535.1
- Location
- CM055256.1:23648674-23655282[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.6e-16 2.9e-13 49.8 0.0 2 42 339 380 338 383 0.95
Sequence Information
- Coding Sequence
- ATGACAGTTCAACAGTATTGTTTAAGATGGAACAATCATCAACCAAACTTCATATCTGTATTCTCTAGTCTTTTAAACAGTCAGTCCCTTGTAGATGTTACTTTAGCAGCAGAAGGCAAACAACTACAAGCACATAAAGTCGTTTTATCTGCATGTAGCTCTTATTTTCAAtcATTATTTGCTACAAACCCATGTAAACATCCAATTGTGATTCTAAAAGATGTCAAGTTTACTGATTTAAAAGTAATGGTGGATTTTATGTACCATGGAGAAGTAAGTGTATCACAGGAACAATTACCATGTATATTGAAGACAgcagaaatgttaaaaattaaagGATTAACAGAAATACCTATGGAGAATCCAGCAGTTAAGTGTCATAGTCAACcagaaaaaacagaaattggTGCACAAAGTACAGATAATTGGAGTTTGGATGAAAATAGACCTGTAAGCCCATCTTCACCTTCAAGTAAAAGGAGAAGATTAAAAAAGAATGTTATATGTAGTTCAACAATAACAACAGAAAATGCAGAAGGTACCcagaatgaaattttattaagtaCAGCAAATAATGTTTTCGAAAGTGTTTTAAAATCCGATAACCCTACAAATGTAGAAGacaattcacaaaaatataatggTATTCCTATTCCAAGTATGCAACCATCAACATCCCATCAAAGGGACACTGAACAAACAACTCATCAAATTATTACAcaCATAACTCCACCTCAAGATGTAAATGTGAATACTTCACAAGTAGAATGTTCCCCGGTAGAAATACCCCGTACTTGTACAACTAGTCAATCAACTACTGGCATTCAGTGGAATGTTTTGGATCAAACTGGCTTCACGCATTTTTCATCAAACTCTGCAGCATTATCGAATAATGTTGGTACACAATTCACTCCTACCTCCCATCCAAATAACAATATCTTAAACCGTCCTAATACCGATGTGACTGTACAGTATCAAAatcttaaaagaaaaagaagtttcAATCCCCAAGGAGATGAGAACTTTCTCAGGGCATTAGAAGCTGTCAGATTTGGCGGGATAGGATTTTGCAAAGCGGCTAGGATGTATGGAGTGAATAATAGAACTTTGTGGTTGGAGTACAAAAAACGGGGATACCCAAATTTTAGACTTAGTATTAAGCATCGTAATCAAGTAACAGATAGTTGTAAGGAGGAAACGGTAGTTCATAGTGATAGAGACATATGTACAGTTAATCATCCTATAGCTATTATAAGTGGTGCTGTTTTTGACAATAAAGATGTTCCGAACCGTTCCAAATACTTTGATGGCAGTGAAAATGCCGCAGAGactattaattttcaaaatattaatcttGAGCATATGTAG
- Protein Sequence
- MTVQQYCLRWNNHQPNFISVFSSLLNSQSLVDVTLAAEGKQLQAHKVVLSACSSYFQSLFATNPCKHPIVILKDVKFTDLKVMVDFMYHGEVSVSQEQLPCILKTAEMLKIKGLTEIPMENPAVKCHSQPEKTEIGAQSTDNWSLDENRPVSPSSPSSKRRRLKKNVICSSTITTENAEGTQNEILLSTANNVFESVLKSDNPTNVEDNSQKYNGIPIPSMQPSTSHQRDTEQTTHQIITHITPPQDVNVNTSQVECSPVEIPRTCTTSQSTTGIQWNVLDQTGFTHFSSNSAALSNNVGTQFTPTSHPNNNILNRPNTDVTVQYQNLKRKRSFNPQGDENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKHRNQVTDSCKEETVVHSDRDICTVNHPIAIISGAVFDNKDVPNRSKYFDGSENAAETINFQNINLEHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910438;
- 90% Identity
- iTF_00459070;
- 80% Identity
- iTF_00459070;