Aaln050611.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- ttk
- Assembly
- GCA_950111635.2
- Location
- OX467718.1:30959715-30990487[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-16 7e-13 49.7 0.0 2 42 346 387 345 390 0.95
Sequence Information
- Coding Sequence
- ATGACAGCTCAACAGTACTGTCTAAGATGGAATAATCATCAACCCAACTTTATATCTGTATTTTCTAGTCTGTTAAATAGTCAATCCCTTGTAGATGTTACATTGGCAGCTGAAGGCAAACAACTTCAGGCTCATAAAGTAGTTTTATCTGCTTGTAGCTCTTATTTTCAGTCTTTATTTGCTACCAATCCATGTAAACATCCCATTGTAATTCTCAAAGATGTCAAATTTATGGATTTAAGAGTAATGGTAGATTTTATGTACCATGGTGAAGTAAGTGTCTCCCAAGAGCAACTACCTTGTATATTAAAAACAgcagaaatgttaaaaattaaagGTTTAACTGAAATTCCAATGGAGAATCCTTCTATTAAGTGTCAAAATCAGTCAGCAGAAAAATCAGACTTATCTACACAAAATGCCGAAAATTGGAGTTTAGAAGAAAACAGGCCTGCAAGCCCTTCTTCTCCTTCAAGTAAAAGgagaagattaaagaaaaatgtaatatgcaaTCCAACTATAACAACAGAATCTGTAGAAGGTACATCAAATGAAATTTTGTTGAGCACAGTAGATAATGTTTTTGAAACAGTTTTGAAAACCGACGAAAACAGAAGTATGGAAGGTAACTCCCAAAAATATAATGGTATTCCCATAACCAGTATGCATCATTCAACTTCCCATCAAAGGGACACAGAACCTACTGCTCACCAAATAATAACGcaAGTAACTCCTCAAGATGTAAATGTAAATACTTCACAAAATTTAGAATGTTCACCTGTGGAAATTTCCCGTACTTGTACAACTAGTCAACCTCCAACTGGCATTCAGTGGAATGTTTTGGATCAATCTGGCTTCACGCATTATTCATCAACCTCCGCAGTATTATCAAATAACGTTGGTACACAATTTACCCACAATAGCGAATCTCATTCCACATCCCCTCAAAATAACAATCTTTTACTTCATTCTAATACAACTGTGACTGAACCGTATCAAAATCATAAGAGAAAAAGGAGTTTCAATCCTCAAGGAGATGAAAATTTCCTCAGAGCATTAGAAGCTGTCAGATTCGGCGGTATAGGATTTTGCAAAGCGGCTAGGATGTATGGAGTGAATAATAGAACATTGTGGTTAGAGTACAAAAAGCGGGGTTATCCGAATTTTAGACTTAGTATTAAGAATCGTAATCAGGTACAAGGTGAGGGCGAATTGAGCgggaataaaaataaagcagAAACTAATATGACTGGTAATACAGAAGCTTGTACGGTCAATCATCCTATAGCTATCATTAGCAGTGCTGTGTTTGATGGAAAGCACGTAGACTTTAAACAAGATAGGGCAAAATATTTTGATGGCAGTGAAAATACCGCAGGAAccattaattttcaaaatatcaatCTTGAACAAATGTAA
- Protein Sequence
- MTAQQYCLRWNNHQPNFISVFSSLLNSQSLVDVTLAAEGKQLQAHKVVLSACSSYFQSLFATNPCKHPIVILKDVKFMDLRVMVDFMYHGEVSVSQEQLPCILKTAEMLKIKGLTEIPMENPSIKCQNQSAEKSDLSTQNAENWSLEENRPASPSSPSSKRRRLKKNVICNPTITTESVEGTSNEILLSTVDNVFETVLKTDENRSMEGNSQKYNGIPITSMHHSTSHQRDTEPTAHQIITQVTPQDVNVNTSQNLECSPVEISRTCTTSQPPTGIQWNVLDQSGFTHYSSTSAVLSNNVGTQFTHNSESHSTSPQNNNLLLHSNTTVTEPYQNHKRKRSFNPQGDENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPNFRLSIKNRNQVQGEGELSGNKNKAETNMTGNTEACTVNHPIAIISSAVFDGKHVDFKQDRAKYFDGSENTAGTINFQNINLEQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910438;
- 90% Identity
- iTF_00026199;
- 80% Identity
- iTF_00026199;