Lcap019386.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- retn
- Assembly
- GCA_949126875.1
- Location
- OX421401.1:357576-364508[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-17 5.2e-13 50.8 0.0 29 89 4 62 1 62 0.93 2 2 0.23 1.7e+03 1.1 0.0 5 38 161 213 157 217 0.53
Sequence Information
- Coding Sequence
- ATGGCGAAGTCTGTACTCGATCTCTACGAATTGTTCAACCTGGTGATAGCACGTGGAGGTTTGGTggatgttattaacaaaaaattatggcAAGAAATTATAAAAGGACTACATTTACCGTCATCGATAACTTCGGCAGCGTTTACGTTGAGAACGCAatACATGAAATACCTTTACCCGTACGAATGCGATAAGCGTACGTTAAGCACACCTGCTGAACTTCAAGCGGCCATCGACGGAAACCGGCGAGAAGGCAGAAGAAGTAGTTACGGCCAGTACGATTCGATGCAACGGTCACCAAATCCCAGTTTACAGATGTCGCCACTATCGCTAGTACCGCAACAACAACAACAGTTGGCCGCTCGAATGATGGGCGGCGGAATGGGTCTACACCACAACGGGGCGCATCATCCTAGTCATCCGCAACCCATGGGACAACCCATGAACGGTGGACCGCTGCCAGGAGTAGCGCCGAGGGAATTCGAAGCTCACATGATGGAATACATGAAATTACTTAATAAGGAAATGCACAGTTCAGCGATAACGCCGCCGCGTCAAGGTGAGATGTCGCCACCGAACACGACTTCGCCGTTAAACCCGATCGAAATGTCACGTTTGACACTTTGGAATCTCTACAACAACAATCAACTACCCATAGAACCACAAAAGGAACCTATAAATCTTTCGGAAACGTCTACGAGTATTTCGAAAAGAGAACCCGAATCGAGGGAATCGCCGCCGCCACCTAAGAGGGTTATTAAAGAAGAAGAAGTTTCCGAAGCTCCCAAGTCGGTGGCTTCTCCTTCAACACACATTAAAATTAACAGTAGAGgGGTCACTCCGAACGGTGACAGCTCCTTAGTAGTGAGTATGGAATTGAACGGAGTCACCTACCAAGGGGTGTTGTTCGCCCAAAATCCATCGTCATCGCGAGGTAGAACGACGTTAGCGTCTTAA
- Protein Sequence
- MAKSVLDLYELFNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKRTLSTPAELQAAIDGNRREGRRSSYGQYDSMQRSPNPSLQMSPLSLVPQQQQQLAARMMGGGMGLHHNGAHHPSHPQPMGQPMNGGPLPGVAPREFEAHMMEYMKLLNKEMHSSAITPPRQGEMSPPNTTSPLNPIEMSRLTLWNLYNNNQLPIEPQKEPINLSETSTSISKREPESRESPPPPKRVIKEEEVSEAPKSVASPSTHIKINSRGVTPNGDSSLVVSMELNGVTYQGVLFAQNPSSSRGRTTLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00735267; iTF_01105357; iTF_00458652;
- 90% Identity
- iTF_00735267;
- 80% Identity
- -