Ocom043455.2
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- retn
- Assembly
- GCA_035357415.1
- Location
- CM068985.1:37896411-37916313[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.6e-20 7.3e-16 60.7 0.0 17 89 29 99 21 99 0.94 2 2 2.7 3.1e+04 -2.2 0.0 26 38 238 250 196 253 0.61
Sequence Information
- Coding Sequence
- ATGCCTCTAGATCCTATTGCTGTGGCACGAATTGTAGCGTTCATACAAGATGGTAGAGGACAACGTGAATCCGCCAGAATTGTTGGAACTCCAATAAATCGACTTCCAATAATGGCGAAATCCGTTCTTGATCTCTAcgaattgtataatttagtgaTTGCCCGTGGTGGTTTGGTAGATGTAATTAACAAGAAGTTATGGCAGGAAATTATTAAAGGATTGCATTTACCGTCTTCTATAACCTCTGCAGCATTTACGTTAAGAACCCAatacATGAAATATCTGTACCCGTACGAATGTGAAAAACGAAGATTAAGTACACCAGCGGAACTACAAGCAGCCATCGACGGTAACCGAAGAGAAGGAAGAAGAAGTAGTTACGGTCAGTACGATTCTATGCAAAGGTCACCTAATCCCAGTATACAGATGTCACCGCTATCTCTAGTCCCGCAGCAACAGCAACAATTGGCCGCTCGAATGATCGGAGGAGGCATGAGTTTACACCACAACGGAGCGCATCATCCTAGTCATCCGCAACCTATGGGACAACCTCTTAATGGAGGACCACTACCAGGTGTAGCGCCTAGCGAGTTCGAAGTTCGCATGATGGAGTACATGAAACTGCTTAACAAAGAAATTCACGGTGCGGCCGTCACGCCACCGCGTCCAGGTGAAATGTCACCGCCGAACGCCACGTCTCCCCTTAATCCACTCGAAATGTCGCGTCTGACACTCTGGAATCTCTACAATAACAATCAACCACCGATAGAACCGCAAAAGGAACCCATCAATTTATCGGAAACGTCCACAAATAACGCGAAAAGAGAATCGGAATCGAGAGATTCGTCACCTCCCGCTAAAAGGATCATCAAAGAAGAAGAAGTATCTGAAGCTCCCAAATCGATTTCGTCACCTTCCACACACATTAAGATTAACAGTAGAGGCGATGCTCGGAACGGCGACAACAGCTCATTAGTCGTCAGTATGGAACTAAACGGAGTAACTTACCAGGGTGTTCTGTTCGCCCAAAATCCTTCGTCATCGCGAGCTAGAACCACGTTGGCATCTTAA
- Protein Sequence
- MPLDPIAVARIVAFIQDGRGQRESARIVGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSMQRSPNPSIQMSPLSLVPQQQQQLAARMIGGGMSLHHNGAHHPSHPQPMGQPLNGGPLPGVAPSEFEVRMMEYMKLLNKEIHGAAVTPPRPGEMSPPNATSPLNPLEMSRLTLWNLYNNNQPPIEPQKEPINLSETSTNNAKRESESRDSSPPAKRIIKEEEVSEAPKSISSPSTHIKINSRGDARNGDNSSLVVSMELNGVTYQGVLFAQNPSSSRARTTLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910306;
- 90% Identity
- -
- 80% Identity
- -