Gnym017353.2
Basic Information
- Insect
- Galerucella nymphaeae
- Gene Symbol
- retn
- Assembly
- GCA_963978555.1
- Location
- OZ021708.1:22066015-22071063[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-20 4.1e-16 60.3 0.0 15 89 3 75 1 75 0.94 2 2 0.54 2.2e+03 0.3 0.0 25 38 206 226 171 230 0.52
Sequence Information
- Coding Sequence
- ATGACAGATGTAGgaaCTCCAATAAATCGTCTTCCAATAATGGCAAAGTCTGTACTGGATCTCTACGAATTGTTCAACCTGGTGATAGCACGTGGAGGTTTGGTGgatgttattaacaaaaaactatGGCAAGAAATTATAAAAGGACTGCATTTACCGTCATCCATAACTTCTGCTGCATTTACGTTGAGAACTCAaTACATGAAATACCTGTACCCGTACGAATGTGAGAAGCGTACGTTAAGTACGCCTGCGGAACTTCAGGCGGCCATCGACGGAAACCGACGAGAAGGCAGAAGAAGTAGTTACGGCCAGTACGATTCGATGCAACGGTCACCAAATCCCAGTTTACAGATGTCGCCACTGTCGCTGGTACCGCAACAACAACAACAGTTGGCCGCTCGAATGATGGGCGGCGGAATGGGTCTACACCACAACGGAGCGCATCATCCTAGTCATCCGCAACCCATGGGACAACCCATGAACGGCGGACCGTTACCGGGAGTAGCACCGAGAGAGTTTGAAGTTCACATGATGGAATACATGAAACTACTTAATAAGGAAATGCACAGTTCGGCGGTAACGCCGCCTCGTCAAGGTGAGATGTCGCCGCCGAATACGACTTCGCCGTTAAATCCGATCGAAATGTCACGTTTGACACTTTGGAATCTCTACAACAACAATCAACTACCCATCGAACCCCAAAAGGAACCTATAAATCTTTCGGAAACGTCTACGAGTATTTCCAAAAGAGAACCCGAATCCAGAGAATCGCCACCGCCACCCAAGAGGATTGTTAAAGAAGAAGAAGTTTCCGAAGCTCCCAAGTCGGTGTCGTCTCCTTCAACGCATATTAAAATTAACAGTAGAGGCGTCACCCCAAACGGTGACAGCTCCTTAGTAGTGAGTATGGAATTAAACGGGGTTACCTACCAAGGGGTGCTCTTTGCCCAAAATCCATCCTCATCACGAGGTAGAACGACGTTAGCGTCTTAA
- Protein Sequence
- MTDVGTPINRLPIMAKSVLDLYELFNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRTLSTPAELQAAIDGNRREGRRSSYGQYDSMQRSPNPSLQMSPLSLVPQQQQQLAARMMGGGMGLHHNGAHHPSHPQPMGQPMNGGPLPGVAPREFEVHMMEYMKLLNKEMHSSAVTPPRQGEMSPPNTTSPLNPIEMSRLTLWNLYNNNQLPIEPQKEPINLSETSTSISKREPESRESPPPPKRIVKEEEVSEAPKSVSSPSTHIKINSRGVTPNGDSSLVVSMELNGVTYQGVLFAQNPSSSRGRTTLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00910306;
- 90% Identity
- iTF_00910306;
- 80% Identity
- -