Lcap019929.1
Basic Information
- Insect
- Lochmaea capreae
- Gene Symbol
- TSC22D1
- Assembly
- GCA_949126875.1
- Location
- OX421401.1:10346929-10351214[+]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.88 5.1e+04 -3.9 0.2 29 43 383 396 380 407 0.55 2 2 3.1e-27 1.8e-22 80.9 2.8 1 47 489 535 489 538 0.96
Sequence Information
- Coding Sequence
- ATGAACGCTGATCCTCGTAGACCAGAAAAAATACAAAGATTTGCTCCCAAACTAAATAATGGCAGTGGTCAAGAAGACCTCACCCCCGACTATATGAATATCTTGGGTCAGCACCAGACCGCGGGAAATATGACTGAAATGCCAGAAAAGCATGGTGAGCCGATTTTAGAGCCGAACCTTCAAGTATCAGCAGCCCTTGAAGAAGTTCAGCCAATAGCTGGCGAAGTTGCTCCTACTAATAATACTACAAATGTGATACCCACCAGCCCTCAGTACGGTGTGGCCATTATACCCAACTCGGCTACTGCGAATGATCTTGCAACTGAAACCATCACTCAGCCAACTGAAACATTAACTGATTCGACTGCAAAACCGGCAGATGATAAAGAACTTCATTCCACACCGAGTAGAAATGATAGATTCAAAGTGGTAAAAATTGCTAGCTTAGAACCTTTTAAACGGGGTCGTTGGAAATGTATGGACTATGTTGATGAAGCTCCCCCTGTTGGAGCTACAAGAGTACCTCAATCGTCTGGTAGTATACAATTATCGGGAGGTACTTATATGCAAACACAGAGTTTACCACAACAACAATTTCAGCAGATGCTCTTGCAAAGTGGATTTACAAATAGTGCGCCTTTCTTCGCCAATGTTCAACCCCAAATTATGCACCAAGGTCAATATTATTATCCCCAAGTAGCGAATGTACAAAATCAAACAATGCAGCAAGTACCCAACAGCATACCTCAATTTATAGCGAACCAGCCATATTTTTCCGCTGGGGTCGTTCCCAATGCGCAGGGCTTTACAATGCAACAAGGTTATTCTAATGTGCAATACGTTCCTGCTAATCTGATCCAAAATCAAAATAGTGCTTTTGTACCAACATCACAACCTGTCCAATTACCTCCGAAtttccagcaaagccaatcgtacGCAGGTCAACCGAATGTATCACAAACGAACGTTCAACCAGTCATGAACGGTCATACATTTACTCCACAAAACGAGCAAGTTAGCGGTAGTTTACCCACGCAGAcagtgaaaaatgttttaatgaaCTCGAATAATACTCAGCAAACGCAAGTTTTACAACAAAACGTGCAAAACGTCCCAGTGCAAagcaatcaaaatattttagttgccCAAGGACAACAATACCAGCAACAAAATGCATTCCAACAGAATGCGACTAATCAACAGCAATCACTTGCTTCAGCTTCCACTTCGCAAGTTATACCCGTGCAATCGCAAACATTCGATCAAAATTTACCCAACAACGTTTACACGAATCCACAGTTTGCTGTTAGTGTAAGTAGTTTAACTGTTCTCGAAAATAGTGAACATCCGACTGAATTAAATGACACTAATAGTGGCGGTAATGTAAATGTGAACGAAAACACGGATGATCCGGCGAAAACAAACCCCGTAGTAAATGCGATCGATAATAAAATAGAACAAGCAATGGATCTTGTAAAAAGTCATCTTATGTATACTGTTAGAGAAGAGGTAgaagttttaaaagaaaaaatagccGAATTAATGGAACGGATCCAGCAATTggaaagtgaaaataattttctcagaTCGCAGATACCGAAGTCGCAAAATCTACCGCCGACTCCGGCGTCTagcatacaacaatcaaacgtAGTCATAAATCCAAATCCCAATTTTCCCGCTAATCCTACGTCAGATACTGCAACCGTAACTAACACTAGCCATAACAATCATTCGCAATCTCATCCAATATCCACTACCGAAACACTGAATCCTCagtag
- Protein Sequence
- MNADPRRPEKIQRFAPKLNNGSGQEDLTPDYMNILGQHQTAGNMTEMPEKHGEPILEPNLQVSAALEEVQPIAGEVAPTNNTTNVIPTSPQYGVAIIPNSATANDLATETITQPTETLTDSTAKPADDKELHSTPSRNDRFKVVKIASLEPFKRGRWKCMDYVDEAPPVGATRVPQSSGSIQLSGGTYMQTQSLPQQQFQQMLLQSGFTNSAPFFANVQPQIMHQGQYYYPQVANVQNQTMQQVPNSIPQFIANQPYFSAGVVPNAQGFTMQQGYSNVQYVPANLIQNQNSAFVPTSQPVQLPPNFQQSQSYAGQPNVSQTNVQPVMNGHTFTPQNEQVSGSLPTQTVKNVLMNSNNTQQTQVLQQNVQNVPVQSNQNILVAQGQQYQQQNAFQQNATNQQQSLASASTSQVIPVQSQTFDQNLPNNVYTNPQFAVSVSSLTVLENSEHPTELNDTNSGGNVNVNENTDDPAKTNPVVNAIDNKIEQAMDLVKSHLMYTVREEVEVLKEKIAELMERIQQLESENNFLRSQIPKSQNLPPTPASSIQQSNVVINPNPNFPANPTSDTATVTNTSHNNHSQSHPISTTETLNPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436236;
- 90% Identity
- iTF_00911602; iTF_00735244;
- 80% Identity
- -